| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6021 |
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| Symbol | |
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| ID | 7975306 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 746692 |
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| End bp | 747750 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644796582 |
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| Product | UspA domain protein |
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| Protein accession | YP_002947856 |
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| Protein GI | 239820671 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.218013 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCATGCAG CAACGATCCA CGGCGAGCGC ACGCTCACCG ACCTTGACTT CGCCCGCCTG
AACAAGCGGC CCGGGACCAA CCATCTGCCG AGCCTCGCGG ACCTCCGGGA CTCGGCCGAA
GCGAGCGGCG ACTGCACCAC CATCCTTGCC GTGACCGACC TCGCTGCGCG TTCGGAGCCT
GCCCTCTCGC GCGCCGCCTG CCTGGCTGCC GAGCACCATG CCAGCCTGGA ACTGCTCTAT
GCGGCCGCGC CCGGCGAGCC TCCCTGCCCC CGCGCCGCGT CGCGGCTGGC GCACCAGGCA
TTGCAGCTCG GCCAGCGCCA TGGGCTGCGC GTGCGCACGA CGAACCCGAT GGCCAGCACA
CCGGAGCACG TGGCAAGCGC AGCGCGTGGC GCGGATCTGC TGGTCATGGG TGCCATGCCC
CGGGAGCGGA GCTTGCTGGC CTTTGTGCGC GGCCAATGGA CCGAGCGCCT CTTGCGGAGG
GTCCAGCGTC CCATGCTCGT GGTGCGGCAG CAGGCCGAGG GGCCTTACCA GCGCCTGCTC
GTCGCCATCG ATTTCACGCA GGCTTCGCGC ATCTTGGTGG AGCGCGCGTT CGCACTCAAC
GGATCGGCGC GAATCGACCT GTTCCACGCC ATCAGCACGA TCAACGAGCG CAAGCTGCGC
AGCGCCGACG TTCCCGAGCA CGTGGTCAGG GCCTACAGGC AGGAGTGCAC GCGGTACGCA
CGGGACCAGA TCGTTCGGTT CACGGATTCC ACCGATGCCC GCAGAAACCG CGTGTCCTGG
GCCATCGGCC GCGGCGATCC GGCCCGGCAG GCCGTGGTCC AGCAGCAGCA CAGCGGCGCC
GAGCTGCTCG TGGTCGGCAA GCATCCAGCT TGGGCGATGT CCGACTTCGT CTTCGGCAGC
GTGGCCCAGC GCGTGCTGCG CCATGCCGCC GGCGATGTCC TGATCGTTCC TCACAACCTC
CAGGCGGCGA CGAAGGCAGC GGCCCTCGAG CGGCTCGGCG GTGGGCAGCG GATGACCCGG
CGCGTGCGCG CGGGTGCGTC TTGCTCGAAC GAGGGATGA
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| Protein sequence | MHAATIHGER TLTDLDFARL NKRPGTNHLP SLADLRDSAE ASGDCTTILA VTDLAARSEP
ALSRAACLAA EHHASLELLY AAAPGEPPCP RAASRLAHQA LQLGQRHGLR VRTTNPMAST
PEHVASAARG ADLLVMGAMP RERSLLAFVR GQWTERLLRR VQRPMLVVRQ QAEGPYQRLL
VAIDFTQASR ILVERAFALN GSARIDLFHA ISTINERKLR SADVPEHVVR AYRQECTRYA
RDQIVRFTDS TDARRNRVSW AIGRGDPARQ AVVQQQHSGA ELLVVGKHPA WAMSDFVFGS
VAQRVLRHAA GDVLIVPHNL QAATKAAALE RLGGGQRMTR RVRAGASCSN EG
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