| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6010 |
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| Symbol | |
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| ID | 7975295 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 733314 |
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| End bp | 734897 |
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| Gene Length | 1584 bp |
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| Protein Length | 527 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644796571 |
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| Product | extracellular solute-binding protein family 5 |
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| Protein accession | YP_002947845 |
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| Protein GI | 239820660 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGGAA TCTCGTGTGC GCTCAGGCGT GGCCGGGCCT GGCTGCCCGC AGCAGTGGCG
GCCGCATCTC TTCTTGTGCT GCCCGGCCTT GCGCTCGCGC AGGGCCAGAA GCCCGTCATC
TGGGGCAAGC CGTCGGAGGT GCTTTCCACC GATCCGCATT CGTCGGGCGA TGGCTCGTCG
TGGACGGTCT TCTACCTGAT CTACGACCAG CTGCTGAGCA CCGATGACAA GCTCAACATC
ACGCCCAAGC TGGCCGAATC CTGGGAGCAG GTCTCGCCCA CGTCCTATGT CTTCAGGCTG
CGCAAGAATG CGGCGTTCTC CAATGGCCGG CCGCTGACCT CCGCCGACGT GGTGGGCAGC
CTCAAGCGCC TGACGGATCC GCAGAAGGCG CGCGGCTGGG GCAAGCAGAT CGGCGGCGTG
AACGATGTAG TCGCCATCGA TGCGCACACC GTGCGCATCG ACCTGGCCAA GCCGAACACC
GCGCTGCTTT CCATACTTTC GGTGGCGACC ACCTCGATCC TGCCGATGAA GGAGATCGAA
GCCGGCAGCT TCGACCCCGC CAAGGGAATG CTCGGCTCGG GGCCCTACAA GGTGGCGCAG
CACCGCCAGG ACGAAGCCTG GCTGCTGGAG CGCAATCCGC ACTATTGGCA AAGCGGCAAG
CCGCTCATGG ACAAGATGAC GATCCGGGTC ATGCCCGACG ATGCGGCGCG TCTGGCCGGC
TTGCGTGACG GCAGCATCGA TGTGGCGACC TTCGAGAACC CGGACACGCC GCGCCTGCTG
GGTGCGATCC CGAGCGTGCA GTCGGTGGTG CAGAAAACGC CCAACTATTT CCACCTGGAC
CTGAGCGGCC TGAACGGCAA CTCGGTCTTC AAGGATCGCC GCGTGCGCCA GGCGGCGGCG
CTGGTCGTGG ACCGGCCCGC GATCGCGAAC GCGGTCTTCG GCGGCGAATC GGCCGTCGAA
TACGCCGTGC CCAGTGCCTT CGGCAAGAAG CTCTGCGACG GACTGCCGAG CTACACGCTG
CCGCGCAAGG AGCGGGTGGC CAGGGCCAAG GCGCTGCTCA AGGAAGCAGG CCATCCCAAT
CCGCGCATCA GCCTCATTGC CTCGTCCGTG CTGGTGACCT ATCCGCTGAT CGCCCAGGTG
CTGCAGCCGC AGCTGCAGGA AGCCGGTTTC AGCGTCCAGG TGCAGCAAGT GCCCGTGGCC
GAGTGGTACA AGCGCGTCCT GACGACGAAC CCGAAGGACT CGGACTTCGA TGCGTCGCTG
ACCTGGTTCG CGGGCTTCTC GGACCCCGGC ATCGTCCTGA ACTGGTGGAC CTCCGGCTTC
TCGCCGGTCT TCACGACATT CCTGGAGCCC GTGGCCGAAT ACGGCGACCT GATGGCGCAG
GTCCGGCAGA CACCCAACGG GCCCGAGCGC GACAAGCTGA TGACGCGTGC CTGCGGATTG
ATCGAGAGCT CGGCCAACAT GATTCCGCTG GTCGGCAAGC CGGACTATAT CGGCTTCCGG
CGCGACCAGC TCGATGCGCG CTTCGTCCCG CTCGAAGGCA ACTTCGACGT CTTCAAGTAC
GTCGCCGATT TCAAGCGCCG CTGA
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| Protein sequence | MTGISCALRR GRAWLPAAVA AASLLVLPGL ALAQGQKPVI WGKPSEVLST DPHSSGDGSS
WTVFYLIYDQ LLSTDDKLNI TPKLAESWEQ VSPTSYVFRL RKNAAFSNGR PLTSADVVGS
LKRLTDPQKA RGWGKQIGGV NDVVAIDAHT VRIDLAKPNT ALLSILSVAT TSILPMKEIE
AGSFDPAKGM LGSGPYKVAQ HRQDEAWLLE RNPHYWQSGK PLMDKMTIRV MPDDAARLAG
LRDGSIDVAT FENPDTPRLL GAIPSVQSVV QKTPNYFHLD LSGLNGNSVF KDRRVRQAAA
LVVDRPAIAN AVFGGESAVE YAVPSAFGKK LCDGLPSYTL PRKERVARAK ALLKEAGHPN
PRISLIASSV LVTYPLIAQV LQPQLQEAGF SVQVQQVPVA EWYKRVLTTN PKDSDFDASL
TWFAGFSDPG IVLNWWTSGF SPVFTTFLEP VAEYGDLMAQ VRQTPNGPER DKLMTRACGL
IESSANMIPL VGKPDYIGFR RDQLDARFVP LEGNFDVFKY VADFKRR
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