| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5980 |
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| Symbol | |
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| ID | 7975019 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 707864 |
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| End bp | 708937 |
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| Gene Length | 1074 bp |
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| Protein Length | 357 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 644796543 |
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| Product | transcriptional regulator, AraC family |
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| Protein accession | YP_002947817 |
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| Protein GI | 239820632 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGATCC TCTCGACCTG GCTCGACGCT GTCGTGGATC AGTTGGAAGT GCAGGATCTG
AACCCAAACG ATCTCACCGC TGGCCTGTGG GGTCCGGGCC TGGCGCGTCT CGCACCCACA
CGCCAGGTCG GCCTGGTACT CGCTCGGCGT TTGTGGCAAC GGGCGGCCAA AGTCTCCACT
GACCCGCTTC TTGGCCTGAA GGTCGGCATC GGATTGCCGT TGCAGGCCAT GAACGTATCG
GGGCTGCTGA TGATGCACAG TCCAACGTTG CGGGAGGCTT TGACGCACAT GGAACGCTAC
CAGCAGCTCG TGAGCAACAG CGGGCGCGTG ACGGCGCACA AGGTGCCGGG CGGCCTGGAG
CTGGGCTATA TCGTTACGCC GTGCCATGTC GACATGCACC ACATGCAGAT TGACTCGGTG
TTCGGCGGGA TACTGGCTTT CCTCAAGCGC TGTAGCACGC GAAGCATTGC ACCCAGGCAC
ATCGCCCTCA CCGCGCCAGA CAAGCTGCTC GGCTCGAGTT ACGCAACGCT ACTTGGCAGT
CCGGTCACGC TCGGCGAGCG CAACGTGTGC GTTGCGTATG ACGACCAAAC GCTCGACCAA
CCCTTTCAAG GCGCCGACCC CGCTCTGCTG GCATTGCTCC GCGCGCAAGC CGACGGCCTG
CTGCGGGCAC AAAACTCATC CGACTCGCTT GAGGCCGCTG TGAGGGCGGC GATTGGTCAA
CGTGGTTTCG GCCACGTGTC GTGTGACGAT GTGGCAAATG ACCTCGGCAT CACTTCGCGC
ACGCTGCAGC GGCGCCTCAG CCAGAACGGC ATGCCTTTTC GTCGTGTCCT CGAGGCAGCC
CGAATGGAAG AAGCCCTGCT TCTTTTGACT CATGGCAGCA TGCCCCTGCC CGACGTGGCT
GAACACCTGG GCTACACCGA GCTCAGTTCC TTCTGGCATG CCGTTAAATC GTGCTGGGGC
TCGACACCGC GCGAACTGCG CAACAATGCC AACGAGCTCG CAAGCATGGC GTCGATGCAT
ATGAATCCAC CGGGGAAATC ACACCCCTCT TCAACGACCC ACGCAATTCG TTGA
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| Protein sequence | MTILSTWLDA VVDQLEVQDL NPNDLTAGLW GPGLARLAPT RQVGLVLARR LWQRAAKVST
DPLLGLKVGI GLPLQAMNVS GLLMMHSPTL REALTHMERY QQLVSNSGRV TAHKVPGGLE
LGYIVTPCHV DMHHMQIDSV FGGILAFLKR CSTRSIAPRH IALTAPDKLL GSSYATLLGS
PVTLGERNVC VAYDDQTLDQ PFQGADPALL ALLRAQADGL LRAQNSSDSL EAAVRAAIGQ
RGFGHVSCDD VANDLGITSR TLQRRLSQNG MPFRRVLEAA RMEEALLLLT HGSMPLPDVA
EHLGYTELSS FWHAVKSCWG STPRELRNNA NELASMASMH MNPPGKSHPS STTHAIR
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