| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5971 |
|---|
| Symbol | |
|---|
| ID | 7975010 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | - |
|---|
| Start bp | 698682 |
|---|
| End bp | 699848 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 644796534 |
|---|
| Product | Extracellular ligand-binding receptor |
|---|
| Protein accession | YP_002947808 |
|---|
| Protein GI | 239820623 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.994871 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAGA CTCCCCACGG CAGGCGACTG CTCGCTGGCA TCGCTGCAAG CACACTCCTG
TTCGCCAGCC AGGCTTTCTC GCAGCAGGTC GTGAAGCTGG GCTACACCGG CCCGCTGAGC
GGTGGCGGTG CGCTGTTCGG AAAGAACGTG CTCGACGGCA TGCGCATGGC CGCCGACGAG
ATCAATGCGG AGGGGTGGCA GATCGGGGGC AAGCCTAGCA AGCTTGAGAT CGTGAGCCTC
GACGACAAGT ACAACCCCGC GGAGTCTGCG ATCAATGCAC AGCGCTTGGT GCAGGCGGAG
AAGACACCGG TGATTTTGGT GGGGCATTCG GGCGGGACTT TTGCGTTGCA GACCGCCAAC
GAGAAGCAAA AGTACTTGCT ACTCTCGTAC AGCAGCGTGC CGCAGATCAC CGCCAATGGG
AATACGCTGA CCTGGCGCAT CCCGCCAGAT TTCACGACGT ATATCCAGCC CTTCACCCAC
TATGCAATGG GAAAGTACGG CAAGAAGCTC GGCATCGCTG TGGGTGACCA TGACTATGCC
AAAGCCTGGA GCGCCGCTTT CCGCCCAACC TGGGAAGCTG CGGGCGGCAC AGTGGTGGCC
GATAACCCCA TGTCCTACAA CCGCGCGGCC GATTTCTACA GCGGCGTGAG TCGTGTGCTG
GCCGCTAAAC CCGATGTGCT GCTGGTGGGG GGCGCATCGG AGCCGACCGC GCTCGTGATC
AAGCAAGCTC GCGAACTGGG CTTCAAGGGC GGCTTCGTCA TTATCGACCA AGCCAAGCTC
GACGAGATCG CCAAAGTCAC GGGTGGCTAC GGTCTGCTCG AAGGTTCCAT CGGCTTGCTG
CCCGTGGTCG ATGATTCTTC GAACGCAATG AAAGCCTTCG TCGAGCGCTA TCGCAAGCTG
TATCCCGGGC GTGATCCGAG CAGTGAGGTC ACGCTGGGCT ACACAGGTGT GCGCGCTACC
GCTGAGGCGA TGAAGGCCGC GTCGAGAGCG ACCGATGTCT TGGCGATTCG AGCGCAACTC
AACACCGCGA TGAAGGCACT GAGCGCCGCA GCCAACCCTC ATGCCTTGAG CGGAGTCGAT
GTCCGCGGCA ATTCGATCGG AGCCGTGCCG GTGGCGGTGG TCGAAGGTGG AAAGGTGCGA
GAAGTGAAGC TGATGGACCT GCGCTGA
|
|---|
| Protein sequence | MKKTPHGRRL LAGIAASTLL FASQAFSQQV VKLGYTGPLS GGGALFGKNV LDGMRMAADE
INAEGWQIGG KPSKLEIVSL DDKYNPAESA INAQRLVQAE KTPVILVGHS GGTFALQTAN
EKQKYLLLSY SSVPQITANG NTLTWRIPPD FTTYIQPFTH YAMGKYGKKL GIAVGDHDYA
KAWSAAFRPT WEAAGGTVVA DNPMSYNRAA DFYSGVSRVL AAKPDVLLVG GASEPTALVI
KQARELGFKG GFVIIDQAKL DEIAKVTGGY GLLEGSIGLL PVVDDSSNAM KAFVERYRKL
YPGRDPSSEV TLGYTGVRAT AEAMKAASRA TDVLAIRAQL NTAMKALSAA ANPHALSGVD
VRGNSIGAVP VAVVEGGKVR EVKLMDLR
|
|---|
| |