Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5959 |
Symbol | |
ID | 7974998 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | - |
Start bp | 677728 |
End bp | 685431 |
Gene Length | 7704 bp |
Protein Length | 2567 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644796523 |
Product | outer membrane adhesin like proteiin |
Protein accession | YP_002947797 |
Protein GI | 239820612 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR01965] VCBS repeat |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.33422 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCACCA TTACCGGCTC CAACGGCAAC GACCTTCTCA CCGGCACGGC CGGCAGCGAC ACCATCAACA GCGGCAACGG GGACGACAGC GTCAGCGGCG GAGCCGGGAA CGATTCATTG AATGGCGGCG CGGGAAACGA CACGCTCGAT GGCGGCAGCG GTAGTGACCA GCTCAACGGA GGATCGGGGG CCGACACCCT GATCTACAAC GTCAGCGAAA ACGCCGCAGC GGGCACCAGC GACGTGTACA CCGGCGGGGC GGGTGTCGAT ACGCTCCAGC TCCAGTTCAC GCGGACCCAG TGGCTGGAGG CTTCCACCCA GACGCAGATC GCTGCCTATC TGACCCATCT TGCGGCAGTG ACCAACGCGA GAACTGGAGA GGTTTCCAAT GGCTCGGCCA GCGATTTCGT TTTCAGCTTC GGGTCGTCCA CGCTGACCGT CCAGATGACT GAAGTCCTGA GAGTCTTCGT GGACGGGGTA GAGGTGAATC CGGCCAACGA GGCGGTGAAG GCGCTGGGCG ATACGGGCGC GACGACCGAA GACGGCTCGG GGATCCAAGT CCACGTGCTG CAGAACGATC TGGTCCCCGA CTTGGTCAAG AGCTTGGCGC TGGCCTCGGC GCCGGCCCAC GGGACGGCGA CGCTCGTTCA ACCGGCGATG GGCGATCCGT CGACCTGGTA TTTCCAGTAC CAGCCCCATA CAGCCGATTT TCAATACTTG GCAGCGGGCG AGAGCGCAAC CGACACCTTC AGCTACGAGG TGATGGACGC CGATGGTGGT AGGGGACTGG CCGCAGTGAC CATCACCATC ACCGGCGCCA ACGATGGTCC GGTGATCACA GCCCAGGACC TGGCGGGTGC GGTGAGCGAG CAGGTTGCGC CGGCGGGCAA TTTGAGCGAC AGCGGCGTTA TCGGCTTCAG TGACCTGGAC CTGAGCGATG TGCACTTGGT GAGCGCCACC GGCACGCCGG TCGGCAGTGT GCTGGGAAGC CTGACAGCGG TCAGGAGCGG CGACACCACG GGGACCGGTA CTGGCGGCCA GATCACCTGG ACTTACACCG TGGATGCCGC GGCGGTCGAG TACCTGGCCG CTGGTCAGAT CCGGGTCGAG AGCTTCACTA TCACGGTGAA CGATCAGCAT GGCGGCATCG TCACTCGGCA GATCGACGTG ACCATCACCG GCACCAACGA CGCGCCGACG ATTGGTACAG CCGATGCCGC TGCGGCGGTG ACCGAGGATG CGGCGACGCC GACCCTGGGC GACAGCGGCA CGATCACCTT CGACGACGTG GACCTGAGCG ATGCGCACAG CGTCAGCGTG GCGGCCGGTC CAGGCAACAC GCTGGGCGGT GTCTTGACGG CTGGCGTCAG CGATGCGGCC ACGGGCGCGG GCGACGGCAC GGTGACGTGG AACTACAGCG TTGCCAACGC GGCCACTCAG TATCTGGCCC AGGGCCAGAC GGCGACGGAG ACCTTCACCG TCAGCATCGC CGATGGCCAC GGCGGCACGG TCCAGCAGCA GATCACTGTG ACGGTGACGG GGACCAACGA CGTGCCGGTG ATCGGCGGCA TTGCCGCCGG CACGGTGAGC GAGGATGCCT CGACGCCGAA CCTGAGCACC AGCGGTGCAT TGACGATCGC CGATGTCGAC CAGGGCCAGT CGAACTTCGC ACCCCAAACC AGCGTTCCTG GCAGCAACGG CCACGGCAAC TTCACGCTGG CGGCCGACGG CAGCTGGACC TACACGGCCG ACAACAGCCA AAACGCCATC CAGCAGCTGG GCGCCGGCCA GTCTATCAGC GATAGCTTCA CTGCCGTGTC TTCCGACGGC ACAGCCAGTC AGATAGTGAC GGTGACGATC ACCGGCACCA ACGACGTGCC GGTGATCGGC GGCGTCGCCA GCGGTGCGGT GAGCGAGGAT GCATCGACGC CGAACCTGAG CACCGGCGGT GCATTGACGA TTGCCGATGT CGACCAGGGT CAATCGAACT TCGCGCCTCA AGCGAGCACC GCTGGCAGCA ACGGCCACGG CAGCTTCACG CTGGCGGCCG ATGGCAGCTG GACCTATACG GCCGACAACA GCCAGAGCGC GATTCAGCAG CTTGGTGCAG GTCAATCAAT CAGCGACAGC TTCACCGCGG TGTCGTCGGA TGGCACCGCC AGCGAGGTGG TGACCGTGAC GATTACCGGC ACCAACGACG TGCCGGTGAT CGGTGGAGTC GCCACCGGCG CGGTGAGCGA GGATGCCTCG ACGCCGAACC TGAGCACCAG TGGTGCGCTG ACGATTGCCG ATGTCGACCA GGGTCAATCG AACTTCGCGC CACAAGCGAG CACTGCCGGC AGCAATGGCT ACGGCAGCTT CAACTTGCTG GCTGATGGCA GCTGGAGCTA CACGGCCGAC AACAGCCAGG CAGCGGTCCA GCAGTTGGGT GCCGGCGAGT CGATCAGCGA CAGTTTCACT GCAGTCTCGT CCGATGGAAC GGCCAGCCAG CTCGTGACGG TGACGATCAC CGGGACCAAC GACGTGCCGG TGATCGGCGG CGTCGCCAGC GGCGCGGTGA CCGAGGATGC CTCGACACCA AACCTGAGCA CCGGCGGTGC GTTAACGATT GCCGATGTCG ACCAAGGCCA GTCCAGCCTC ACAGCCCAGG CCGGCACTGC CGGCAGCAAC GGCTACGGCA GCTTCAACTT GCTGGCTGAT GGCACTTGGG CCTACACGGC CGACAACAGC CAAAGCGCGA TCCAGCAGCT GGGTGCCGGC CAGTCGCTCA GCGACAGCTT TACTGCCGTC TCGTCCGATG GAACGGCCAG CCAACTCGTG ACGGTGACCA TCACCGGGAC CAACGATGTG CCGGTGATCG GCGGCGTCGC CAGCGGCGCG CTGAGCGAGG ATGACTCGAC TCCGAACCTG AGCACCGGCG GTGCGTTGAC GATCGCCGAT GTCGACCAAG GCCAGTCCAG CTTCACAGCC CAGGCCGGCA CAGCCGGCAG CAACGCCTAT GGCAGCTTCA CGCTCGCGGC CGACGGCAAC TGGATCTACA CCGCCGACAA CAGCCAGGCA GCGATCCAGC AACTGGGTGC CGGGGAGTCG CTCAGCGACA GCTTCACCGC AGTGTCCTTC GACGGCACGG CCAGCCAACT CGTGACAGTG ACGATCACTG GCACCAACGA TGTACCTGTG ATTGGTGGTG TCGCCACCGG CGCGGCGAGC GAGGATGCCT CGACGCCGAA CCTGAGCACC GGTGGCGCGC TGACGATCGC CGATGTGGAT GCGGGCCAGT CGAACTTCGC GCCTCAAGCA AGCACCGCCG GCAGCGGCGG CTACGGCAGC TTCACGCTGG CGGCCGACGG CACTTGGACT TATGCGGCCG ACAACAGCCA GGCAGCGATC CAGCAGTTGG GCGCCGGCGA GGCGATCAGC GACAGTTTCA CGGCGGTGTC GTTCGATGGG ACGGCCAGCC AACTCGTGAC TGTGACCATC ACCGGGACCA ATGACGTTCC GGTGATTGGC GGCGTAGTCA GCGGCGCGGT ACAAGAAGAC GTTGCGGTGT CCGGTGGCAG CCTCGCGGCC AGTGGGGCGC TGACGATCGC CGATGTGGAT GCCGGCCAGT CGAACTTTGC GCCTCAAGCG AGCACTGCCA GCAGCAATGG CTATGGCAGC TTCACGCTCG CGGCCGGCGG CACTTGGACT TATGCGGCTG ACAACAACCA AAGCACGATC CAGCAACTTG GCGTCGGTCA ATCGATCAGC GACAGCTTCA CCGCCGTGTC CTCTGACGGC ACGGCCAGCC AGCTCGTGAC CGTGACCATT GCCGGGACCA ACGATGTACC GGTGATCGGT GGCGTTGCCA CCGGCGCGGT GAGCGAGGAT GCCTCGACGC CGAACCTGAG CACCAGTGGT GCGCTGACGA TTGCCGATGT CGACCAGGGT CAGTCCAACT TCACGCCCCA GGCCGGCACC ACCGGCGGCA ACGGCTACGG CAATTTCACG CTGGCGGCCG ATGGCAGCTG GACCTACACG GCCAACAACA GCCAGGCGGC GATCCAGCAG TTGGGCGCCG GCGAGTCGGT CAGCGATAGC TTCACTGCTG TGTCGTCCGA CGGTACGGCC AGCCAGCTCG TGACGGTGAC GATCACTGGC ACCAATGACG TGCCGGTCAT CGGCGGCGTC GCCAGCGGCG CGGTGCAAGA AGATATTGCG GTGGCGGGGG GCAGCCTCGC GGCCAGCGGG GCGTTGACGA TCGTCGATGT AGATGCCGGC CAGTCGAACT TCGCGCCCCA AGCGAGTGCC GGCGGCAGCA ACGGCTACGG CAGCTTCACA TTGGCGGCCG ACGGCAACTG GAGCTACACG GCCGACAACA GCCAGGCAGC AATCCAACAG CTGGCCGCAG GTCAATCGCT CAGCGACAGT TTCACGGCAG TGTCGTCCGA TGCGACGGCC AGCCAGGTGG TGACGGTGAC CATTACCGGG ACCAACGATG TGCCGGTCAT CGGCGGCGTC GCCAGCGGCG CGGCGCAAGA AGATATTGCG GTGGCGGGGG GCAGCCTTGC GGCCAGCGGC GCGCTGACGA TCGCCGATGT GGATGCAGGA CAGTCCAGTT TTGCAGCCCA GGCCGGCACC GCCGGCAGCA ATGGCTACGG CAGTTTCGCG CTGGCAACCG ACGGCAACTG GACCTACACG GCCGACAACA GCCAAAGCGC GATCCAGCAG CTGGGCGCGG GTCAATCGAT CAACGACAGG TTCACCGCGG TGTCGTCGGA TGGCACCGCC AGCCGGGTGG TGACCGTGAC CATTACCGGG ACCAACGACG TGCCGGCGAT CGGTGGCGTG GCCAGCGGGG CGGTGAGCGA GGACGCCTCG ACACCGAACC TGAGCACCGG CGGTGCGCTG ACAATTGCCG ATGCCGACCA AGGCCAGTCG AACTTCGCGC CCCAAGCGAG TGCCGGCGGC AGCAACGGCT ACGGCAGCTT CACGCTGACG GCCGGCGGCA GCTGGACCTA CACGGCCAAC AACAGCCAGG CGGCGATCCA GCAACTGGGC GCAGGTCAAT CGATCAACGA CAGCTTCACC GCCGTGTCCT CCGACGGCAC GGCGAGCCAG CTCGTGACGG TGACGATCAC CGGTACCAAT GACGTGCCGG TCATCGGCGG CGTCGCCAGT GGCGCGGTGA GCGAGGATGC CTCGACACCG AACCTGAGCA CCGGTGGCGC GCTGACTATC GCGGATGTGG ATGCGGGCCA GTCGAACTTC GCGCTCCAAG CAGGCACCGC CGGCAGCAAT GGCTACGGCA GCTTCACGCT GGCGGCCAAT GGCGCCTGGA CCTACACGGC CAACAATGGC CAGGCGGCGA TCCAACAGCT GGGCGCGGGT CAATCGATCA ACGACAGCTT TACCGCGGTG TCATCCGACG GCACGGCCAG CCGGGTGGTG ACCGTGACCA TTGCCGGGAC CAACGACGTG CCAGTGATTG GTGGCGTCGC GAGCGGTGTG GTGAATGAGG ATGCCTCGAC GCCGAACCTG AGCACCAACG GTGCGCTGAC GATCGCCGAT GTCGACACGG GGCAGTCCAG CTTCACAGCC CAGGCCGGCA CCGCCGGCAG CAACGGCTAC GGCAGCTTCG CGCTGGCGGC CGATGGCAAC TGGACCTACA CGGCCAACAA CAGCCAGGCG GCGATCCAGC AGCTGGGCGC CGGCCAGTCG ATCAGCGACA GCTTCACTGC GGTGTCTTCC GACGGGACAG CCAGCCGGGT GGTGACCGTG ACCATCGCCG GCACCAACGA TGCACCGGTC CTGGGCTCTG CCGCGACACC CGTCCTGGCG GCAGCCAACG AGGACGGCGG CGCACCGGTC GGGGCCGTCG GGACGCTCAT ATCGAGCCTG GTGAACCTGA ATCCGCCAGC CGGCGGCCTC GACAACGTGA CCGACGCGGA CAACGGCGCC ATCACGGGCA TCGCGTTGAC GGGCGCGAAC GCCACCAACG GAAGCTGGTG GTATTCCACC AACGGCGGCG CCAACTGGGC GGCGGTGGGG GCGGTGTCGA ACGCGTCCGC ACTGCTGCTG GCTGCGAACG CGAACACGCG TGTCTACTTC CAGGGGAATT CGAACTTCAA CGGGACGCTC AGCGATGGCA TCACCTTCCG CGCCTGGGAT CAGACGAGCG GCGCGGCGGG CACCACGGTG AGCACAGTCA CGAACGGGAA CAGCTCTGCG TTCTCGAGCG CCACCGACAC GGCGAGCATC ACCGTCAGCG CGGTGAACGA CAATCCGGTC GCCGTGGCCG ACAGGATCAT CGTGTCGGAC AGCACGCTCG TCACGCTGTC GGCGAACTCG CTGCTCGGCA ACGACACCGA CATCGACGGT CTCGCCTTGA CAATCACCAG CGTCGGCGGC GCGGTCGGAA TTTCCGGCCT GACCCTGGAC GCCGCCAACG GCACGATCAG CTTCACCAGC GGCAGCACGG CGGGAGCCAC GGCCGGCAGC TTCCAGTACA CCGTGTCGGA CGGCGCCGGG GGCACCACCA CGGCGACGGC GACGATCGAC GTCAGGGCCG TGTCCAGCGG CAACGGCGCC GACACGATCG ATCTCAGCGC GACCGGCACC TACCAGGCCT CCTTCATCGA TAGCCGCGGC GGCGCCGACA ACCTGACCGG CGGTGCGGGC GGCGACGTCT TCATCGGCGG GACCGGCAAC GCAGCCGATA CGCTGATCGG CTCTGCCGGC AACGATCTCC TGATTGGCGG TGACGGCAAC GACACACTGT CGGGCGGCGC CGGCAACGAT GTGCTGCGTG GTGGCATCGG CAACGGTGAC ACGATGGACG GCGGCGCCGG CAGCGAAGAC CTGCTGGACT TCTCGGACGG TACCGTGGCA GTCAATTTCA CGCTGGTCCA GAGTGCCGTA TCGACCGGCA TCGCCAACGG CACCGGCGGG CTCGGCAACA ACGACACCTA CCAGAACATC GAAGGCGTGA TCGGAACGGG CCTGGCCGAC ACCCTCACCG GCAGCGCCTC GAACGACATC ATCCGCGGCG GCGCCGGCAA CGACACGCTC GATGGAGCAG GGGGCACCGG TGACCTGCTC GACTTCTCCG ACGGCACCGC CGGCCTCACG TTCACGCTGA CGCAAAGCAG CAGCACGACA AGCTTCAATG CCAGCGCCGC CGGGCTCGGC ACCGACGGCT ACAAGAACTT CGAGGGCGTC ATCGGCACGG CCTTCGGCGA CACGATCACC GGTTCGGCGT CGAACGACCA ATTGCGCGGC GGCGGCGGCA ACGACGTGAT CAACGGCCTT GCGGGCGACG ACCGCATCGT CGGTGGGGCC GGCGCCGACA TACTCACCGG CGGCGCGGAC AACGACACCT TCGTCTTCGA CTCGGCACCC AACGCGGTGG ATTCGGTCAC CGACTTCGAT GCTTCGGGAT CAGCGGCGAG CGGCGACCTG ATCGAACTGT CGCGCGGGAC GTTCACGGCC CTCACGACCG CCAGCGGAAA CACGCTGTCG GCGGCCGAGT TTGCGTCCCT GAACGGCGGT GGTGCGGGAG ACACGGTGGG CGCGGGCGTG CACGTGATCT ACGACAGTGC GACGGGCAAC CTGTACTACG ACACCGACGG CCTGGGCGCC GCGAACCGCA CGCTGGTGGC GACGTTGGCG CTGAGCAACC CGGCCGACAC CTTCGACAGC AACGACATCA AGGCCGGCGT GTGA
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Protein sequence | MTTITGSNGN DLLTGTAGSD TINSGNGDDS VSGGAGNDSL NGGAGNDTLD GGSGSDQLNG GSGADTLIYN VSENAAAGTS DVYTGGAGVD TLQLQFTRTQ WLEASTQTQI AAYLTHLAAV TNARTGEVSN GSASDFVFSF GSSTLTVQMT EVLRVFVDGV EVNPANEAVK ALGDTGATTE DGSGIQVHVL QNDLVPDLVK SLALASAPAH GTATLVQPAM GDPSTWYFQY QPHTADFQYL AAGESATDTF SYEVMDADGG RGLAAVTITI TGANDGPVIT AQDLAGAVSE QVAPAGNLSD SGVIGFSDLD LSDVHLVSAT GTPVGSVLGS LTAVRSGDTT GTGTGGQITW TYTVDAAAVE YLAAGQIRVE SFTITVNDQH GGIVTRQIDV TITGTNDAPT IGTADAAAAV TEDAATPTLG DSGTITFDDV DLSDAHSVSV AAGPGNTLGG VLTAGVSDAA TGAGDGTVTW NYSVANAATQ YLAQGQTATE TFTVSIADGH GGTVQQQITV TVTGTNDVPV IGGIAAGTVS EDASTPNLST SGALTIADVD QGQSNFAPQT SVPGSNGHGN FTLAADGSWT YTADNSQNAI QQLGAGQSIS DSFTAVSSDG TASQIVTVTI TGTNDVPVIG GVASGAVSED ASTPNLSTGG ALTIADVDQG QSNFAPQAST AGSNGHGSFT LAADGSWTYT ADNSQSAIQQ LGAGQSISDS FTAVSSDGTA SEVVTVTITG TNDVPVIGGV ATGAVSEDAS TPNLSTSGAL TIADVDQGQS NFAPQASTAG SNGYGSFNLL ADGSWSYTAD NSQAAVQQLG AGESISDSFT AVSSDGTASQ LVTVTITGTN DVPVIGGVAS GAVTEDASTP NLSTGGALTI ADVDQGQSSL TAQAGTAGSN GYGSFNLLAD GTWAYTADNS QSAIQQLGAG QSLSDSFTAV SSDGTASQLV TVTITGTNDV PVIGGVASGA LSEDDSTPNL STGGALTIAD VDQGQSSFTA QAGTAGSNAY GSFTLAADGN WIYTADNSQA AIQQLGAGES LSDSFTAVSF DGTASQLVTV TITGTNDVPV IGGVATGAAS EDASTPNLST GGALTIADVD AGQSNFAPQA STAGSGGYGS FTLAADGTWT YAADNSQAAI QQLGAGEAIS DSFTAVSFDG TASQLVTVTI TGTNDVPVIG GVVSGAVQED VAVSGGSLAA SGALTIADVD AGQSNFAPQA STASSNGYGS FTLAAGGTWT YAADNNQSTI QQLGVGQSIS DSFTAVSSDG TASQLVTVTI AGTNDVPVIG GVATGAVSED ASTPNLSTSG ALTIADVDQG QSNFTPQAGT TGGNGYGNFT LAADGSWTYT ANNSQAAIQQ LGAGESVSDS FTAVSSDGTA SQLVTVTITG TNDVPVIGGV ASGAVQEDIA VAGGSLAASG ALTIVDVDAG QSNFAPQASA GGSNGYGSFT LAADGNWSYT ADNSQAAIQQ LAAGQSLSDS FTAVSSDATA SQVVTVTITG TNDVPVIGGV ASGAAQEDIA VAGGSLAASG ALTIADVDAG QSSFAAQAGT AGSNGYGSFA LATDGNWTYT ADNSQSAIQQ LGAGQSINDR FTAVSSDGTA SRVVTVTITG TNDVPAIGGV ASGAVSEDAS TPNLSTGGAL TIADADQGQS NFAPQASAGG SNGYGSFTLT AGGSWTYTAN NSQAAIQQLG AGQSINDSFT AVSSDGTASQ LVTVTITGTN DVPVIGGVAS GAVSEDASTP NLSTGGALTI ADVDAGQSNF ALQAGTAGSN GYGSFTLAAN GAWTYTANNG QAAIQQLGAG QSINDSFTAV SSDGTASRVV TVTIAGTNDV PVIGGVASGV VNEDASTPNL STNGALTIAD VDTGQSSFTA QAGTAGSNGY GSFALAADGN WTYTANNSQA AIQQLGAGQS ISDSFTAVSS DGTASRVVTV TIAGTNDAPV LGSAATPVLA AANEDGGAPV GAVGTLISSL VNLNPPAGGL DNVTDADNGA ITGIALTGAN ATNGSWWYST NGGANWAAVG AVSNASALLL AANANTRVYF QGNSNFNGTL SDGITFRAWD QTSGAAGTTV STVTNGNSSA FSSATDTASI TVSAVNDNPV AVADRIIVSD STLVTLSANS LLGNDTDIDG LALTITSVGG AVGISGLTLD AANGTISFTS GSTAGATAGS FQYTVSDGAG GTTTATATID VRAVSSGNGA DTIDLSATGT YQASFIDSRG GADNLTGGAG GDVFIGGTGN AADTLIGSAG NDLLIGGDGN DTLSGGAGND VLRGGIGNGD TMDGGAGSED LLDFSDGTVA VNFTLVQSAV STGIANGTGG LGNNDTYQNI EGVIGTGLAD TLTGSASNDI IRGGAGNDTL DGAGGTGDLL DFSDGTAGLT FTLTQSSSTT SFNASAAGLG TDGYKNFEGV IGTAFGDTIT GSASNDQLRG GGGNDVINGL AGDDRIVGGA GADILTGGAD NDTFVFDSAP NAVDSVTDFD ASGSAASGDL IELSRGTFTA LTTASGNTLS AAEFASLNGG GAGDTVGAGV HVIYDSATGN LYYDTDGLGA ANRTLVATLA LSNPADTFDS NDIKAGV
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