Gene Vapar_5956 details

Gene Information

• Locus tag: Vapar_5956
• ID: 7974995
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012792
• Strand: +
• Start bp: 674145
• End bp: 674669
• Gene Length: 525 bp
• Protein Length: 174 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 644796520
• Product: short-chain dehydrogenase/reductase SDR
• Protein accession: YP_002947794
• Protein GI: 239820609
• COG category: [I] Lipid transport and metabolism; [Q] Secondary metabolites biosynthesis, transport and catabolism; [R] General function prediction only
• COG ID: [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAGATC ATTCCATTCA AGGCAAGACC GTCCTCATCG CAGGTGGCGC CAAGAACCTC 
GGCGGGCTGA TTGCGCTCGA CTTGGCCAAG CAAGGGCCCA AGGCCGTCGC CGTCCACTAC 
AACAGCGCAG TCAGCAAGGG CGAAGCCGAC AAGACTGTGG CGGCCATCGA AAAGGCAGGC 
GCCAAGGCCG TGGCCCTGCA GGCCAACTTG ACGACGGCCG CCGCGGTGGA GAAGCTGTTC 
GCCGACACGA TGGCCGCCGT CGGAAGACCG GACATCGCCA TCAACACCGT GGGCAAGGTG 
CTCAAGAAGC CGATGACCGA GATCAGCGAG GCCGAGTACG ACGAGATGAC GGCGGTCAAC 
TCCAAGACCC GCATCGCATC CCGTGCTTCG GTGCCCAAAC CCCGGTCCGC CAAGCCCATG 
TCGACCATGA GATTCCGGTC CAACCAGGTC GCGCCCAAGG CGCGCACCTG CTGCTCAACA 
GGGTGCGTCA GCGCTCGCGG GCAGCATGGC GCAACACCTG GGTGA 

 

Protein sequence

MADHSIQGKT VLIAGGAKNL GGLIALDLAK QGPKAVAVHY NSAVSKGEAD KTVAAIEKAG 
AKAVALQANL TTAAAVEKLF ADTMAAVGRP DIAINTVGKV LKKPMTEISE AEYDEMTAVN 
SKTRIASRAS VPKPRSAKPM STMRFRSNQV APKARTCCST GCVSARGQHG ATPG