Gene Vapar_5943 details

Gene Information

• Locus tag: Vapar_5943
• ID: 7974982
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012792
• Strand: -
• Start bp: 650399
• End bp: 657703
• Gene Length: 7305 bp
• Protein Length: 2434 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 644796507
• Product: conserved repeat domain protein
• Protein accession: YP_002947781
• Protein GI: 239820596
• TIGRFAM ID: [TIGR01451] conserved repeat domain

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGCTGCC GCTCGCAGCG ATGGCGCCGT GCCGGCGCCA AGCTCGCGAT CGGCCTGGCG 
CTGCTCTCGG CGCTCTTCCT GACGCTGTTC CTGGCGTCCG CCGCGGTGCA TGCAGCACCC 
GCACCCGGCG GCAGCGTCAT CCGCAACGTG GCCAAGGCCA GCTATGTGCC GGCCGGCTTT 
GCGCAGACCG AGACCTCCAG CTCCAACAGT GTGGTGGCCA ACGTGCTGCC GGTCGAGGCG 
CTGGTGCTGA CGCAGGACCA GGCGGTCACC CGGCCGCCGG CCACTGTCGT CACGCTGAAT 
CACCTGCTCA CCAACACCGG CAACGTGCCG TCGAGCTATG CATTGGGCTT CGCCAACAAC 
GCGGGCGGCT GCCCGGCGGA CACGCTCGAT CTGTCGGCGC TGCGCGTCGT GCGCGACATC 
AACAACAACG GCGTGGTGGA TCCGGGCGAT CCGCTGCTGC CGCTCGGCGC GCCCGGCGCG 
CTGGCGCTGC GACCCGGCGA AACCGCCTCG CTCCTGGTGG AGGGAACGAT CCCGACCACC 
GCGGACGGCG TGGCCTGCGC TGCGCTGACC GCGACCACTG CGCTGCAGAA CCTGAGCGCC 
ACCAACCGCG ACACCGTGAC GGTCGGCAAC GTGGCGGTCA TTGCCCTCAC CAAGAGCGCG 
AGCTATCCGG GCGTCATCGT TCCAGGACAG AGCCGCATCG ATTTCATGAT CTCCGGCACC 
AACATCGGCG CCCGCGATGC GCAGCCGGGC AATGCCACCG CGCCGGCCGG CACGCCGGTG 
CTGGTGAACG GCGCGCCCGC GAGCCTGGTG CTGGTGCGCG ACCTCGTGCC GGCCGGCACG 
CAGTACATCG CAGGCACACT GCAAAGCACG GCCGCGGGCG CCGTGCGCCT GTTCCGCCTG 
CCGGGCGATC CGGCCTTCAG CTACCGCACC GCCGACGACG CGGCCGCGAT CGAAGTGGCC 
ATTGGCGTGC CGACGGCCGT GTCGCGCAAC GCCTCGATCG CCATGCAGTT CGCGGTGCTG 
GTGAAGGCCG ACCAGTCCGG CGACATCCGC AACACCGCCC AGGGCCACTA CAACGACGGC 
ACGGCGCCGG TGGTGTCGCC GTCCAACACG GTGCTCATCA CCACGAGCCA GAGCCGCATC 
GGCGTGGCCA AGACCGCATC GGTGCCGCGT GCGAACCGCG GCGCCGACGG CCTGCTCGAC 
GGGACCACCA CCGTGCGCTT CAGTGTCGAC GTGCGCAACT ATGGCGCCGT GTGGCTCTAC 
GGCGTGCAGG CGGTCGACCT GCTCGAAGGC AGCGGCGCGA CCCAGTTCGG CAGCTACACC 
GGCGCGGCGG TGCCGGGTCC CGGCCAGTAC ACGGTCGTGC CAGGCTCGAT CGCCATTGCG 
GGCAACCAAG GCAACGGCGT GAGCGGGACC GTGGCCGCCG CGAACAACGG CTTCACCGGC 
ACCGCCGCCG CCCAGAACCT GCTGGCGCCC GGTGCGGTGC TGCCTGTCGG TGCGCAGGTC 
ACCGTGCAGT TCGACGTTCG CATCAATGTC AGCGGCCGCA CCGGCACGCT TCTCAACAGC 
GTGCGTGCGC AGGGCGCCCT CACGCCCGGC GGCGCGCCCG TGGCCTACGA CGATTCGGTC 
GACGGCGCCA GCCCGGACCC GGACGGCGAC GGCAATCCCA ACAACAACGC CTCGCCCACG 
CCGGTGTCGA TGCAGCTGCC CTCGCTCTCG CTCGCCAAGA CCGCTTCGCT GCCGCGGCGC 
GTGGCCCAGG GCGTCTACGA GATCGACTAT CGGCTGCTCG TCACGAACAC GGGCGTCGCG 
CCGGCGCCGA ACGTGCGCGT GATCGACAAC CTGAACTGCA CCTTCGACAT GGACAAGCCC 
GAGGGCCTGG TCGCGTCGTG GGAACTGGTG GACGCGCCCA AGGTTCGCAG CGGCTTGCTC 
AACGCCGCGG GAAGCTTCAC CGGGCGCGCG GCCTGCGACC GCGAGGCCCT GGCCAGCAGC 
GATGCATTCA GGCTGCCGAC CGAGGCGGTG CTCAGCCTCA CCGACGGCAG CCGCGGCCTC 
GAGCCCGGCC AGAGCGAGGA GGTCAGCTTC AGCGTCCGCA TCACGCAGAA GCCTGGCGCA 
GGGGACCGCC GCGCGACCTT CAACAACAAG GCATGGGCTG CGGCTTTCGA CCAGAACACC 
ATCAACGTCA CGCCCGCGAT GCTGGTCGCG GCCACCGCGA ATTCGGTGCA GTCGCTGCTG 
GCCGATCCGG CCGGCACGGT CTACAACGCC GTCACGCGAG AGCCCGTCCA GGGCGCGGTG 
GTCACGTTCA CGCGGCAGTC GTGCAGCAGC GGATCGGTCA CGCCGATGAA CGCGGCGGAA 
ATCTACGGCG GCTCCTCGGG CACCTACACG TTCAATGCCG ACGGCAGCGT CTCGATGACG 
ACCGGTGCCG ACGGCAGCTA TCAGTTCTAC CTGCAATCGC CGCCGTTCAT CGGCCTGTGC 
ACCTACACGC TGCAGGTGGC GCCGCCGGCA GGCAGCGGCT ATGTCTTCCC GTCGCAGCTG 
ATCCCTGTGA CGGCCGGCAC CTTCGGCAGC TGCGGTCCGG TGGTGCCCGG TGCGCTGCCG 
CCCAAGGGGG CCGAGCCGAC GACGCACTAT TTCTCGGTCA CGTCCGGCTT CAATGCTTCG 
AACGAGGCGT GCGACGTGGT GCACAACCAC ATCCCGCTCG ACCCCGGCAA TGTGCTCGGC 
CTGGTGCTGC GCAAGGAAGG CAGCAAGCGG CAGGTCGAGT TCGGCGACTT TCTGGACTAC 
GCGTTGACGG TGACCAACAA GACGGGTACG CCGGTGACCG GCATCTCGAT CAGCGACAGC 
CTGCCGCCGG GCTTTGCCTA CGTGAGCAAC AGCGCGCGCC TGAACGGTAC GGCCACCGGC 
AATCCGGTCG GCGGCGCGGG CCCGAAGCTG GTGTTCAACT ACCCGACGCT GACCCTGGGC 
ATCGACCAGA TGGCCATGGT GCGCTACCGC GTGCGGGTCG GCGTGGGCGC ACCCACGAAC 
GGCGATGCGA TCAACCGTGC GCGTGCCCAT TCGGGTCCGC TGCAGTCGAA TCTTGCGAAC 
TGGACCGTGC GCGTCACCGG GGGTGTGTTC TCGGACGAGG CCTTCATGTT CGGCAAGGTC 
TACATGGACT GCAAGGCCGA CGGCAGGCAG GAGGGCAGCG ACGAGATCGG CGTGCCCGGC 
GTGCGCCTGT TCATGGAGGA CGGCACCAAC GTCGTCACCG ACGTGGAGGG CAAGTGGAGC 
CTCTACGGCC TCAAGCCGGT CACCCACGTG CTGCGCGTCG ACCAGACCAC GCTGCCGTCC 
GGTGCCCGCC TCGAATTGCT GGACAACCGC AACGCGGGCC GCCCCGAGAG CCGCTTCGTC 
GACCTGAAGA AGGGCGAATT CCACAAGGCC AACTTCATCA TCGGCAACTG CGACAACCGC 
GCGACGCTGG ACGACGTGGT GGCCCGCCGC GCGGCCATCG CCGCGATTCC GGACACCGAA 
GCCGAAGCCC AGGTGCGCAT GCGCCTGAAT GCGGAAGGGC AGATCGTTGC GGTGGGCGAC 
TTGCGCTCGC TGCCCGCGAG CGGCCAGGCG CTGGCGAGCG GCAGCACGGG CTCGACCACG 
ACGTCGTCCG CGCCGCTGAT CGCCATGCCC GATGCGCCGG CCAATGCCAG CAGCTTCGTC 
GGTGCCGCCT CCGGCAGCAT GAGCGGCACG CTGGGGACGG CGGCTTCGGC GGCGTCGACC 
CCGGCAGGCA GCCTCTTTGC CGCACTGAAC GGCTTGCCGG CGGCCGCGAA AGGCGTGTCT 
GCCGAAGGCG GTGCGGCAAC CGGTGTCGGC GCCTTTGCGA GTCGGCCGGT CAACACCTCC 
GCCGCCATGC TGGAGCCGCG CAGTGCACCG CTGCTGCCCG AGGCAGTGCC CAGTCCCATC 
GAGCTGGAGG TGCTGCTGCC GCAGATCGAA AGCAACGCGC TCGGCTTCCT CGGCCTGAAG 
AACGGCGACA CCGTTCCCGC ACAGTCGATC AACGTGCGCG TCAAGGGCGA GTCCGGCCTG 
GCGCTGCGGC TCAGCGTCAA CGGCCAGGCC ATCGACGAGC GGCGCGTCGG CAAGAAGACG 
CAGCTGCCAT CGAAGAGCAT CGGTGCCTGG GAATACATCG GCGTGGTGCT GCAACCCGGA 
ACCAACCGCC TGCAGCTCGA TGCGGTGGAC GATTTCGGCA ATGTGCGCGG CAGCGAACAG 
ATCGGCATCG TCGCGCCCGA CAAGCTCGGC GCGATCCAGA TCGACCTGCC CGAGACCGCC 
TATGCCGACC TGCGCACGCC CGTGACCGTG AAGGTGCGGC TGGCCGATGC GGCGGGTGTG 
CCGGTGACGG CGCGCACCCA GCTCACGCTG GAGGTCGACC GCGGCCGCTG GCTCGACGAG 
GACCTGAACC CGGCCGAGCC GGGGACGCAG GTCTTCATGG ACGGGGGGGC GGCCGAGTTC 
CGCCTGCTGC CGCCGGGCGA GGCGGGCGAT GCGCGCCTGC GCGTGAGCGC CGGCAGCTTC 
GTCAAGGAAG CACGGCTTGT GCTCTTGCCC GAGATGCGCC CGATGCTCGG CGTGGGCATC 
GTCGAAGGCG TGCTCGATTT CACCCAGCGC GGCAGCGTGC CGCTCGGCGC CATGCCGGCC 
GGCGCGGCCT TCGAAGCCGA ACTGACGGGC CTCGCGGACG AGCGCGAGAA CCGCCGCGCG 
GGCGCCCGCG CCGCCTTCTT CTTCAAGGGC ACCGTCAAGG GCGAGTACCT GCTCACGGCC 
GCCTTCGACT CCGACAAGAC GCGTAAGGAC CGGCTGTTCC GCGACATCCG GCCCGACGAG 
TTCTATCCGA TCTATGGCGA CTCGTCGGTC AAGGGCTTCG ATGCGCAGAG CACGCAGAAG 
CTCTACGTGC GCATCGACAA GAACCGCTCC TACCTGCTGT ACGGCGACTT CACGACCAGC 
AGCAGCACGG AGGTACGAAA CCTCAGCCAG AGCAACCGCG CGCTCACCGG CCTCAAGCAC 
GTGTACGAGA CCGCGGACGT GCGCGCGACC AGCTATGCGT CGCGCACCGC GCAGACACAG 
CAGGTGGAGG AGTTCCGCGC CGTCGGCACG TCGGGCCCCT ATTACCTGAG CACGACCGGC 
GGCGAGTTCG TCGACAACAG CGAGCAGATC GAGGTGGTGG TGCGCGACCG CAACCAGCCC 
GACATCGTGC TGCAGCGTAC GCCGGCCACG CGCTTCGTGG ACTACACGGT CGAGCCGCTC 
ACGCGCCGCA TCCTGTTCAC GCATGCCGTC GCGTCCGTCG ATGCCAACTT GAACCCGCAG 
TCGATCCGCG TCACCTACGA GGTCGACAGC GGCGGGCCCA AGTTCACCGT GGCCGGCACC 
GACGTGCAGG TCAAGGTCGG CGAACGGCTG CAGCTGGGCG TGGTCGCCAG CACCGACCAG 
AACCCGGATA ACCGCCGCAG GCTGGGCGCG TTGACGGCCG TGGCCCGCCT CGGCGACAAC 
ACCACGGCTG CGGCCGAGGT GGTGCGCACC GATTCCGACG AGAAGGGCAA GGGCGAAGGT 
GCCCGCGTCG AAGTGCGCCA TCAGACCGAG CAGCTCGCGG TGGTGGCGCT GGCGAGCAAG 
ACCACCACCG GTTTCGACAA CCCGGGCGCG AGCTTTTCGG CGGGACGCAC CGAGGTCTCC 
GGCCGCGCCG AGTACAAGAT CGACGAAGAC ATGGCGGTGC GCGCCGAAGT GCTCTACAGC 
AAGGATGCGC TGCTGGAAGG CGACCGCAAG GGCGCGAGCG CGAGCTTGCG CAAGAAGCTG 
GACCACGACA TCGTCGCGGA GGTCGGCCTG CGCCACGGCC AGAGCCGCAG CGGCCTGGCC 
TCGGGTTCGG GCTTCGACTA CGGCGAGATC TCCACCTACA ACGGCAATCT GGGCAGCCGT 
GTCGGCGCCG GCAGCGTGAC CGCGCTCGGC GGCGCCGCGA CGGCCAATGC CAGCGCCGAG 
AGCGAGAGCC TGACCACCGT GCGCGCGCGC CTGTCGGCCC AGGTGCCGGG CGTGCCGCTG 
GCCCAGGTCT TCGTGGAGGG CGAGCAGGAC CTGAAGAACT CCGACCGCCA CACGCTGGCC 
GTCGGCGGCA ACTACGCGAT CACGGACAAG ACGCGCGTCT ATGCGCGCTA CGAGCTCATC 
TCCAGCCTGT ATGGCGCCGC CCAGCTCGAT GCCGCGCAGT CCAACAACGT CGGCATCCTC 
GGCATCGAGA GCAACTACAT GGACGGCGGG CGGCTGTACA ACGAATACCG GCTCGCAGAC 
AGCATCGACG GCCGTGCCGC CCAGAACGCC ATCGGGGTGC GCAACACCTT CAAGCTCACC 
GACAGGTTCA GCCTGACCGG CGGCCTCGAG CACACGCGCC AGATGGGCGG CTACGCCAAC 
AGCGCCAACA ACGGCACCGG CTATGCGGCC GGGCTGGGTG AATCCACCGC GGTCACGGCG 
GGCGTCGAGT ACCTCACCGA CACCTACAAG CTCAGCGGCA TCCTCGAAGG GCGCAAGGGC 
GACGACGCGA ACACCCGTCT CTTCAGCACC GGGTTCGGCT ACAAGATCAC ACCGGCGTGG 
AGCCTGCTGG CGCGCAGCGT GGTGAGCGAC AGCGAAGGGC AGGGCGCGAG CGGCGGCAAC 
GAGCGCCACC TCCAGCGCCA CCAGATCGGC CTGGCGTACC GCCCGGTCGA CGACGACACC 
TGGAACGCGC TGATGCGCTA TGAGCGTCGC TCGGAGCGCA TCGTGGGCCA CGGAAATGCG 
GCCGGCGCGT TGACCGGGGG CAGCGCCTTC GGCGGCGAAT CCGGCAACGC CAGCCTGCCG 
GGCAGCACCA GCGCGGACAT CGTCTCGGCG CACCTCAACT ACAACCCGGC GCGCGGCCGC 
GTGCTGAGCG CGCGCTACGC GGGCAAGCTC TCGCGCGTCG ACGACGGCTT CCTGGCCAGC 
AGCTACTGGG CCCATCTGCT GCAGGCGCGC TACACCCAGG ACATCAACAA GGACTGGGAC 
TTCGGCGTGC AGGCCGGCCT GCTGTACGGC AAGGGCGGCG CGCTGCAGAA GACCCTGGGC 
GTGGAGGTCG GCTACCAGAT GGCGAAGGAC CTGTGGATCT CTGCGGGCTA CAACTTCGTG 
GGCCTCAACG ACCGCGACCT GACGGCCAAC GAATACACCA GCAAGGGCGC GTACATCCGG 
CTGCGTTTCA AGTTCGACGA GACCCGGTTG GGCTTCCCAT CGGCCGCTGC CGGTGCATCG 
AAACCTGCGG CTGCCGCGCC TGCAGCGCAG CCGGCATCCG TCGCCGGCAG CGGCGAACCT 
CTGCTTCCCA CGTCCCCAGA AGAAATAACC AGTTCAGGCC AATGA 

 

Protein sequence

MGCRSQRWRR AGAKLAIGLA LLSALFLTLF LASAAVHAAP APGGSVIRNV AKASYVPAGF 
AQTETSSSNS VVANVLPVEA LVLTQDQAVT RPPATVVTLN HLLTNTGNVP SSYALGFANN 
AGGCPADTLD LSALRVVRDI NNNGVVDPGD PLLPLGAPGA LALRPGETAS LLVEGTIPTT 
ADGVACAALT ATTALQNLSA TNRDTVTVGN VAVIALTKSA SYPGVIVPGQ SRIDFMISGT 
NIGARDAQPG NATAPAGTPV LVNGAPASLV LVRDLVPAGT QYIAGTLQST AAGAVRLFRL 
PGDPAFSYRT ADDAAAIEVA IGVPTAVSRN ASIAMQFAVL VKADQSGDIR NTAQGHYNDG 
TAPVVSPSNT VLITTSQSRI GVAKTASVPR ANRGADGLLD GTTTVRFSVD VRNYGAVWLY 
GVQAVDLLEG SGATQFGSYT GAAVPGPGQY TVVPGSIAIA GNQGNGVSGT VAAANNGFTG 
TAAAQNLLAP GAVLPVGAQV TVQFDVRINV SGRTGTLLNS VRAQGALTPG GAPVAYDDSV 
DGASPDPDGD GNPNNNASPT PVSMQLPSLS LAKTASLPRR VAQGVYEIDY RLLVTNTGVA 
PAPNVRVIDN LNCTFDMDKP EGLVASWELV DAPKVRSGLL NAAGSFTGRA ACDREALASS 
DAFRLPTEAV LSLTDGSRGL EPGQSEEVSF SVRITQKPGA GDRRATFNNK AWAAAFDQNT 
INVTPAMLVA ATANSVQSLL ADPAGTVYNA VTREPVQGAV VTFTRQSCSS GSVTPMNAAE 
IYGGSSGTYT FNADGSVSMT TGADGSYQFY LQSPPFIGLC TYTLQVAPPA GSGYVFPSQL 
IPVTAGTFGS CGPVVPGALP PKGAEPTTHY FSVTSGFNAS NEACDVVHNH IPLDPGNVLG 
LVLRKEGSKR QVEFGDFLDY ALTVTNKTGT PVTGISISDS LPPGFAYVSN SARLNGTATG 
NPVGGAGPKL VFNYPTLTLG IDQMAMVRYR VRVGVGAPTN GDAINRARAH SGPLQSNLAN 
WTVRVTGGVF SDEAFMFGKV YMDCKADGRQ EGSDEIGVPG VRLFMEDGTN VVTDVEGKWS 
LYGLKPVTHV LRVDQTTLPS GARLELLDNR NAGRPESRFV DLKKGEFHKA NFIIGNCDNR 
ATLDDVVARR AAIAAIPDTE AEAQVRMRLN AEGQIVAVGD LRSLPASGQA LASGSTGSTT 
TSSAPLIAMP DAPANASSFV GAASGSMSGT LGTAASAAST PAGSLFAALN GLPAAAKGVS 
AEGGAATGVG AFASRPVNTS AAMLEPRSAP LLPEAVPSPI ELEVLLPQIE SNALGFLGLK 
NGDTVPAQSI NVRVKGESGL ALRLSVNGQA IDERRVGKKT QLPSKSIGAW EYIGVVLQPG 
TNRLQLDAVD DFGNVRGSEQ IGIVAPDKLG AIQIDLPETA YADLRTPVTV KVRLADAAGV 
PVTARTQLTL EVDRGRWLDE DLNPAEPGTQ VFMDGGAAEF RLLPPGEAGD ARLRVSAGSF 
VKEARLVLLP EMRPMLGVGI VEGVLDFTQR GSVPLGAMPA GAAFEAELTG LADERENRRA 
GARAAFFFKG TVKGEYLLTA AFDSDKTRKD RLFRDIRPDE FYPIYGDSSV KGFDAQSTQK 
LYVRIDKNRS YLLYGDFTTS SSTEVRNLSQ SNRALTGLKH VYETADVRAT SYASRTAQTQ 
QVEEFRAVGT SGPYYLSTTG GEFVDNSEQI EVVVRDRNQP DIVLQRTPAT RFVDYTVEPL 
TRRILFTHAV ASVDANLNPQ SIRVTYEVDS GGPKFTVAGT DVQVKVGERL QLGVVASTDQ 
NPDNRRRLGA LTAVARLGDN TTAAAEVVRT DSDEKGKGEG ARVEVRHQTE QLAVVALASK 
TTTGFDNPGA SFSAGRTEVS GRAEYKIDED MAVRAEVLYS KDALLEGDRK GASASLRKKL 
DHDIVAEVGL RHGQSRSGLA SGSGFDYGEI STYNGNLGSR VGAGSVTALG GAATANASAE 
SESLTTVRAR LSAQVPGVPL AQVFVEGEQD LKNSDRHTLA VGGNYAITDK TRVYARYELI 
SSLYGAAQLD AAQSNNVGIL GIESNYMDGG RLYNEYRLAD SIDGRAAQNA IGVRNTFKLT 
DRFSLTGGLE HTRQMGGYAN SANNGTGYAA GLGESTAVTA GVEYLTDTYK LSGILEGRKG 
DDANTRLFST GFGYKITPAW SLLARSVVSD SEGQGASGGN ERHLQRHQIG LAYRPVDDDT 
WNALMRYERR SERIVGHGNA AGALTGGSAF GGESGNASLP GSTSADIVSA HLNYNPARGR 
VLSARYAGKL SRVDDGFLAS SYWAHLLQAR YTQDINKDWD FGVQAGLLYG KGGALQKTLG 
VEVGYQMAKD LWISAGYNFV GLNDRDLTAN EYTSKGAYIR LRFKFDETRL GFPSAAAGAS 
KPAAAAPAAQ PASVAGSGEP LLPTSPEEIT SSGQ