| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5936 |
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| Symbol | |
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| ID | 7974975 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 637656 |
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| End bp | 639026 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644796500 |
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| Product | HipA N-terminal domain protein |
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| Protein accession | YP_002947774 |
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| Protein GI | 239820589 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3550] Uncharacterized protein related to capsule biosynthesis enzymes |
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| TIGRFAM ID | [TIGR03071] HipA N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.647866 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGGGT CTGAGGACAA CGTGTATCGC TTGCGCGTGA CGCACGATGG TGGCACCCCG
GTCGGCGAAC TCGCCTACTC AAGAGCGGAA GACCGGTGGT CGTTCCGTTA TGACCACGCA
TGGGCGCGCC AGGGTGCCTT TCAACTCTCG CCGGCGTTTC CCTTGGAGCC GCCACCGGAC
GGCTATGACT CTCATGCGAT CCGACGCTTC ATCGTGAACC TCTTTCCGGA GGGGGCGCCT
CTTCGCGCCG CGCTCGAGCA ACTCCACGTC GCACCGAGCA ACGCATTTGC ACTGCTGCGG
GAAATGGGAG GGGAGACGAC CGGGGCCCTG GAGTTCCAGC CCTTCGATCA ACCACCGGCT
GCGGCCGCTC GTCGAGAACA ACGCTTTCTG TCGCGAGAGG AGCTCAGCGG CCGTATCGAT
GCTGCAAAGG AAGGCGGCCT CACGGTGTGG GACGGCCGGG TGCGAATGTC GATTGCGGGC
TATCAGGACA AGCTGGCCGT ATGGGCTGCG CACGACCTCG TCCATGACAC AGAGGCCAGC
ATGTGGCTGC CGGAGCCGCC ACTGGCCTCG ACTTTTATTC TCAAGCCGCA GCCGGCCGGC
CCACGTACAC CTCACCTCGT GGCCAACGAG CACTACTGCA TGACGCTCGC AGGGGCGTAT
GGCGCTCAGG TGGCCCGTGT TGCCATCATG CGGCTGAGGG TTCCGGTTCT GGTCGTCGCC
CGGTTCGACC GGCAATGGCG CGCCGAAGAA AACCACGATT GGGTGACAAA GCTGCACGTC
ATCGACGCCT GCCAGGCTGC CGATCTTTCG GTGGATTCCA AATATGAGCG CCATCTGGGC
AATTCCCCCG CCCTCGCACC ATATCGCGAT GGGATGAGTC TGCCGCGACT TTTTGGTCTT
GCCGCTCTCA TGCGCCGCCC GGCGGTGGCG CGGTTGGAGA TGTTGCGTTG GGCACTGTTC
CAGCTGGCGG TCGGCAACTC CGATGCGCAT GGAAAGAACT TTTCATTCTT CGTCGACCGA
ACCATGCTTG AGCCCGCGCC GTGGTATGAC GTCGTGAGCG TGGCTCAATA TCCGGAACTC
GACCAAAGCT TCGCAATGTC CTTCGGCGAT GCCTTCGGAT GGGAAGAACT CAACGCGATG
GAGCTTGCGC ATTTCGCCCA CCTATGCGGC ATCGATCAAA AGCTGTTGCA CCGGGAGACC
GAGCGGCTGT CCCGTGCGAT GAAGAGAGCA CCCGAACTTC TTTCCGCCCC GGTGTACACC
GAAGAGGAGC GTGACTTTCT GCACCCGATA TGCGAACTGG TGCAGCGGCG CAGCCAAACG
TTGGTGGAGC TGGCGGCCGG CGCCAGTGCC TTCACCGCCG AGCACTTCTA G
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| Protein sequence | MSGSEDNVYR LRVTHDGGTP VGELAYSRAE DRWSFRYDHA WARQGAFQLS PAFPLEPPPD
GYDSHAIRRF IVNLFPEGAP LRAALEQLHV APSNAFALLR EMGGETTGAL EFQPFDQPPA
AAARREQRFL SREELSGRID AAKEGGLTVW DGRVRMSIAG YQDKLAVWAA HDLVHDTEAS
MWLPEPPLAS TFILKPQPAG PRTPHLVANE HYCMTLAGAY GAQVARVAIM RLRVPVLVVA
RFDRQWRAEE NHDWVTKLHV IDACQAADLS VDSKYERHLG NSPALAPYRD GMSLPRLFGL
AALMRRPAVA RLEMLRWALF QLAVGNSDAH GKNFSFFVDR TMLEPAPWYD VVSVAQYPEL
DQSFAMSFGD AFGWEELNAM ELAHFAHLCG IDQKLLHRET ERLSRAMKRA PELLSAPVYT
EEERDFLHPI CELVQRRSQT LVELAAGASA FTAEHF
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