| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5927 |
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| Symbol | |
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| ID | 7974966 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 630334 |
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| End bp | 631629 |
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| Gene Length | 1296 bp |
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| Protein Length | 431 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644796492 |
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| Product | porin |
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| Protein accession | YP_002947766 |
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| Protein GI | 239820581 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.186679 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAGAAGA AAACCATCGC GGCCGTGGTT GTGCTGTCCT GCGCCGGTGC GGCCAGCGCG
CAATCGTCCG TCACCTTGTT CGGAGCGCTC GATGCGGGTG TCAGCTACTA CAGCACGACG
AGTTCCTTCT ACAACAACAC CGGCCGCCTG CTCCTGCCAG GGGCCGACAT CAAGCGCAGC
CAGACCACGC TCTCCAACAG CGGCACCACG CCGAGCCGTC TGGGATTCCG CGGCACCGAG
GACCTGGGCG GCGGCCTGGC CGCGAGCTTC TGGATGGAAG CCGGCCTGGC GAACGACTCG
GGCACGGGTG CCGGGCCGGG CAGCGTCATC GTCTTCAATC GCCGCTCCAC CGTGAGCCTT
TCAGGTCCGT TCGGCGAGGT CCGCCTGGGC CGGGACTACA CACCCACCTA CTGGAACGAC
GCCGTCTTCA GCCCGTTCAG CACGCTGGGC GTGGGCACCA ACGTGGTGTC GAGCGTCGGC
AGCAACCTGC AGATCGCGAA GGGACCCGGC TCGGCGGTCT CGGCGACGGA CAACTACATG
CGCACCAGCA ACAGCATCGG TTACTTCTTG CCGCCAGGGC TGGGCGGCTT CTATGGCCAG
GTGCAGTACG CGCTGCACGA GAACGCAAGC CAGAGCAATG TGCCAGGCAC GCCGAGCGCG
AAAGGGCGTT TTGCCGGCGG CCGGCTGGGT TATGCCGCCG AAGCGCTCGA CGTGGCACTG
GCCTATGGCG AAAGCACCGC TGCGGATGCG ACGGCACTGG ACGCCGCGGG GGTGGCGACC
GGCGCCCGGC TGCGCGAGAA GATCAAGACC CTCAGTCTCG GTGCCTCCTA CAACTTCGGG
GCTTTCAAGC TCTTCGGGGA ACTGTCGCAG GTGCGCGATG TTTCCGTCTC GACGGTACCT
GTGCCCGTCC TGGGCGCGCT CAGCACGCGC GAGACCGACA AGTACAAGGG CGGCCTGCTC
GGCGTGACGG TGCCTGCGGG CGCCGGTCTG ATCAAGGGCT CTTACTCCTG GGTGAAGTTC
GACAATGACC TGGGGGCTGC TGCCAGCCCC TTTGCCGCCG ACCGCGATGC CTCGGTTCGC
AAGCTCGCCA TCGGCTATGA GCACAACCTC TTGAAGCGCA CCGCGCTGTA CGCCACGGTG
GCGCGCATCC GCATCAAGAA CGGACAGAAC AACCCGGCCA TCATGGCTGC GAGTACCGGC
GGCACGGCAG GCTATCTTTC CAGCGGTGCT GGTGTGTCGG GCTATGCGCC TCGCGGCGCG
ATGGGCTACG ACTTCGGCAT CAGGCACGTG TTCTAG
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| Protein sequence | MKKKTIAAVV VLSCAGAASA QSSVTLFGAL DAGVSYYSTT SSFYNNTGRL LLPGADIKRS
QTTLSNSGTT PSRLGFRGTE DLGGGLAASF WMEAGLANDS GTGAGPGSVI VFNRRSTVSL
SGPFGEVRLG RDYTPTYWND AVFSPFSTLG VGTNVVSSVG SNLQIAKGPG SAVSATDNYM
RTSNSIGYFL PPGLGGFYGQ VQYALHENAS QSNVPGTPSA KGRFAGGRLG YAAEALDVAL
AYGESTAADA TALDAAGVAT GARLREKIKT LSLGASYNFG AFKLFGELSQ VRDVSVSTVP
VPVLGALSTR ETDKYKGGLL GVTVPAGAGL IKGSYSWVKF DNDLGAAASP FAADRDASVR
KLAIGYEHNL LKRTALYATV ARIRIKNGQN NPAIMAASTG GTAGYLSSGA GVSGYAPRGA
MGYDFGIRHV F
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