| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5893 |
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| Symbol | |
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| ID | 7975944 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 604898 |
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| End bp | 605800 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644796468 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_002947742 |
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| Protein GI | 239820557 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.372386 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGAAA TCTCGATCAC AGCATTGCGC GTGTTCCGCG CCGTGGCGCG CTGCGGCAGC
TTCACCGCCG CGGCTCGCGA TCTCGGCTGC GCCCAATCGG CGATCAGCCG GTACATGGCC
TCCCTGGAAG AAGGCTTGCA GCAGACGCTG GTGCTGCGCG GCCATCGCAG CGTGCAACTC
ACCGCCGCGG GCGAGCTGTA TCTCGAGACA GTCAATCGCG CGCTCGATGA GCTGGATCAC
GGCGCGATGC GAATCGCGAG CGGCGGCGAA CGACCGACGG TCAAGGTGCT GGCCATGCCG
TCGTTCGCTT CGCGCTGGCT CATCCCGCGG CTGGCGCGGC TGCACCTCGC ACGCATCGAC
GTCGAGATCG AGCTCGCCAC GTCGATCTGG GACGCCGACT TCCGCAAGGA ACGGTTCGAT
CTCGCGATCC ACTACGGCGA CGGTTCCTGG CCCGGCGCAC AGCTGCTGAT GCATGACAGC
CTGGTTCCGG TAGCTTCACC CCGGCTGCTG AAAGGCCAAG CGCTCGCGCG CATCGGTGAC
TTGGACCGGT TCCCGTGGCT GCATGACTCC CTGCGAAGCA GCAAGTGGTC TCGATGGCTC
GCAGCCTCCG ACGCGGCAGG CTTGTCGAGC GCCCGAAGCA TGAAGTTGCA GGACACCGAG
GCAACGCTCA CTGCGGCCGT TGCGGGTCTC GGCATCGCCA TCGGTCATGT CGTGCTGGTC
GACAACGATG TGCGGGAGGG CCGCCTGGTG GAAGCCTGGC CACGGCATGC GCCGCTTGCC
GCCGGATATC ACCTGATTTT TGCTAAGCGA GCTGCGCGAA ACCAGCCCGC GCGCGCGCTG
GCGGAGTGGT TGATGAAGGA GGCCGTCGAG TTTCGCAAGA CACTGGAGGC GCCCCCCGTC
TGA
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| Protein sequence | MSEISITALR VFRAVARCGS FTAAARDLGC AQSAISRYMA SLEEGLQQTL VLRGHRSVQL
TAAGELYLET VNRALDELDH GAMRIASGGE RPTVKVLAMP SFASRWLIPR LARLHLARID
VEIELATSIW DADFRKERFD LAIHYGDGSW PGAQLLMHDS LVPVASPRLL KGQALARIGD
LDRFPWLHDS LRSSKWSRWL AASDAAGLSS ARSMKLQDTE ATLTAAVAGL GIAIGHVVLV
DNDVREGRLV EAWPRHAPLA AGYHLIFAKR AARNQPARAL AEWLMKEAVE FRKTLEAPPV
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