Gene Vapar_5881 details

Gene Information

• Locus tag: Vapar_5881
• ID: 7975932
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012792
• Strand: -
• Start bp: 591858
• End bp: 592430
• Gene Length: 573 bp
• Protein Length: 190 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 644796457
• Product: Carboxymuconolactone decarboxylase
• Protein accession: YP_002947731
• Protein GI: 239820546

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCACGCA TTTCCCTGCC CACTCCCGAC ACCATGACGC CCGAGCAACT GGCGGTCCAT 
CAGAAGGTGG TCTCCGGCCC GCGCGGAGAA ATCAAGGGCC CACTGCGCGC CGCGCTGCAC 
AATGCCGAGT TGGCCGACCG CTGGCAAGCG TTAGGCGCGC TGCTGCGCTA TGGCACCTCG 
ATGACACCGC GCCAGTCGGA ATTGGCCATC CTGGTGACCG GGCGGCACTG CCGCTCGCCT 
TTTGAATGGT TCGCGCACCG GCCCGAAGGT GCCAAGGCCG GGCTGTCGGA CGACACGCTG 
GACGACCTGC TAGCGCAGCG CCAGCCGCGC GGGCTGGACG CCACTGACCA GGTCATCTAC 
CGCTATGCGC TGGAGCTCAA CCGCTCGCAC TCGGTCAGCG ACGCCACCCA TGCCGCCGCG 
GTGCAGTTGC TGGGCGAAAA AGGCGTGGTG GAACTCACGG CCTTGGTGGG TTACTACACC 
ATGGTCGCCA TGACGCTCAA CGCGCACGAG ATCCCGTTCC CGCCCGGCGC GGAACCGGCG 
TTCAAGCTGC CGCAACAAGA AGAATTGAAG TGA 

 

Protein sequence

MPRISLPTPD TMTPEQLAVH QKVVSGPRGE IKGPLRAALH NAELADRWQA LGALLRYGTS 
MTPRQSELAI LVTGRHCRSP FEWFAHRPEG AKAGLSDDTL DDLLAQRQPR GLDATDQVIY 
RYALELNRSH SVSDATHAAA VQLLGEKGVV ELTALVGYYT MVAMTLNAHE IPFPPGAEPA 
FKLPQQEELK