Gene Vapar_5825 details

Gene Information

• Locus tag: Vapar_5825
• ID: 7975876
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012792
• Strand: +
• Start bp: 532406
• End bp: 533122
• Gene Length: 717 bp
• Protein Length: 238 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 644796406
• Product: conjugal transfer protein TrbP
• Protein accession: YP_002947680
• Protein GI: 239820495

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.516785
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCCGAA GGTTCCAGAT ACGCAACCGA GTGAAAACTC AGCCGCAGGT GAGCGCCTGG 
TCGGTCTCGA ACGGCTCGCT CGAAGCGCTC AAATGGGTCG GTCTGTTGCT CATGGCGGGC 
GATCACGTCA ACAAGTATCT GCTGCATGAG TCGAGCCCTG CTCTCTACGC ATTGGGTCGC 
ATGGCGATGC CGCTCTTCGG CTTCGTGCTC ATGGTCAACC TGGCACGCCC CGGAGCGCTC 
GAGAGCGGCA TGCACCTGCG CGTCATGAGG CGACTGGCGA TATTTGCGCT GCTGGCCACG 
CCGGCTTTCG TTCATCTGGT CGGCTGGTGG CCGTTGAACA TCCTTGCCAC CCTTTTTCTG 
GCAACGCTGA TCGTCTGGCT GCTGGAGCGG GACGGCTGGG CCGCGCGCCG CACGGCCTTG 
ATCGCCTTCC TCGTTGGTGG CGCCATGGTG GAGTTCTGGT GGCCGGCGCT GCTCTTCTGC 
CTAGGCTCCT GGGCGTTCCT GCGCAGGCCC AACGGTCTGC GGATGCTGTT GTGGACCTTG 
GCGACGGCTT CACTCACTGC CATCAATGGC AACTTCGCCG CAGTGACCGC CCTGCTCTTG 
ATCTGGGGAG CTCGGCAGGT CGAGATTCCG CTGCCGCGCA GTCGGTGGGT CTTCTACGCC 
TTCTATCCAA TTCACCTCTC GCTGATCGCA CTGGCGTTGA TCGTCACCGA AAATTGA 

 

Protein sequence

MSRRFQIRNR VKTQPQVSAW SVSNGSLEAL KWVGLLLMAG DHVNKYLLHE SSPALYALGR 
MAMPLFGFVL MVNLARPGAL ESGMHLRVMR RLAIFALLAT PAFVHLVGWW PLNILATLFL 
ATLIVWLLER DGWAARRTAL IAFLVGGAMV EFWWPALLFC LGSWAFLRRP NGLRMLLWTL 
ATASLTAING NFAAVTALLL IWGARQVEIP LPRSRWVFYA FYPIHLSLIA LALIVTEN