Gene Vapar_5820 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5820 
Symbol 
ID7975871 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand
Start bp525505 
End bp526347 
Gene Length843 bp 
Protein Length280 aa 
Translation table11 
GC content66% 
IMG OID644796401 
ProductConjugal transfer protein TrbG/VirB9/CagX 
Protein accessionYP_002947675 
Protein GI239820490 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3504] Type IV secretory pathway, VirB9 components 
TIGRFAM ID[TIGR02781] P-type conjugative transfer protein VirB9 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCCCC GGCCCGTGTA CCGCAGCTTT CCGCTGGCGC TCGGACTGGC GACAACTCTG 
GCGCTCGCCG CACCGTACGG CCGAGCCGCG ACCGTGCCGG CCGTCGGCAA GGTCGATGCC
CGGGTACGGG TGGTCGCCTA CGACCCGGCG GACGTCATCA GCTTGCAGGG GTACGTGGGC
TATCAGATCC ATCTGCAGTT TGCCGAAGGC GAGGAGTTCG TGAATCTCGG CTCCGGCGAC
AACGGTGCCT TCGATATCGG TGCCGAGCGC AACCACTTCT TCATCAAGCC CAAGGAAGCG
CGCGCCGCGA CCAACTTCAC GGTCCTCACG AACCTGCGGG CCTATCATTT CGACTACACC
GTCTCCTCCA TCGCGCCGGT AGGCACTGCC GCCAGGCGCA TGGTGTATTC GATACGTTTC
ACCTACCCGG AAGACGAGGT CCGGAAGGCA GCCGAGGATC AGGAACGGCG CCGGGCCGAG
GCGCGCATGA GCGAAGGGGC GACCGATCGA CCACGCAACT CCGACTACTG GTTCTGCGGC
AGCGATTCGC TCAAGCCCGT GAGCGCCCAC GACGACGGGG CGCAAACGCG TCTGCGTTTC
CACACGCGCT CCGACTTCCC GGCGATGTTC GTCCAGAACG ACGACGGGTC CGAATCGCTG
TTGAACTTCA ACGTCGACGC GGACGAGGTA GTGATTCACC GCGTGGCGCG CCGCTTCGTG
CTGCGGCGGG GCGGGCTGGT CGGTTGCGTG ATCAACCGGT CCTTCGTCGG CGGCGGCGCG
CGCACCCCCA CCAACACCAG CGCAACAGGT GTGCGGCGCA TCACGGCAGG AGATGGGCCA
TGA
 
Protein sequence
MKPRPVYRSF PLALGLATTL ALAAPYGRAA TVPAVGKVDA RVRVVAYDPA DVISLQGYVG 
YQIHLQFAEG EEFVNLGSGD NGAFDIGAER NHFFIKPKEA RAATNFTVLT NLRAYHFDYT
VSSIAPVGTA ARRMVYSIRF TYPEDEVRKA AEDQERRRAE ARMSEGATDR PRNSDYWFCG
SDSLKPVSAH DDGAQTRLRF HTRSDFPAMF VQNDDGSESL LNFNVDADEV VIHRVARRFV
LRRGGLVGCV INRSFVGGGA RTPTNTSATG VRRITAGDGP