| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5816 |
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| Symbol | |
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| ID | 7974937 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 520074 |
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| End bp | 522581 |
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| Gene Length | 2508 bp |
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| Protein Length | 835 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644796397 |
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| Product | type IV secretion/conjugal transfer ATPase, VirB4 family |
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| Protein accession | YP_002947671 |
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| Protein GI | 239820486 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCTGC TCTCACGCCC CGAGCACGCG CTGCGCCGCG AAGCCGGCGC CGCGACCATG
ATTCCGCTTT CGGCGCATGT GGACGAGCAT GTGGCCCTGA CACGTGCCGG AGACTATGTG
CAGACACTCC GCCTGGCCGG CACGAGCTTC GAAAGCGCGG ACGACGAGGA CATCAACAGC
TGGCATGAGC GCCTCAATGT CCTGCTGCGC AACATCGCGT CGCCCAACCT GGCGCTCTGG
ACCCACGTGA TCCGCCGCCG CGAGATGGCC TATCCGGCCG GGCGGACGAC GCCCGGCTTC
GCCGACGAGA TCGAGCAGCG CTATCGCCGC AAGATGGCTG GCGAACGGCT GATGGTCAAT
GAACTGTACC TGTCGGTCGT CTTCCGGCCG CAGCCCACCC GCATCGGCAA CGCCGCATTG
CGGCTGTTCA AGCGCGCGGA CCCGGAGGGT GCGCGGGCGG AGCTGCGCGA TGCGCTGGAC
GCCTGCAGCA AGCTGCGCCA GGAACTGCTC GCCGCCCTGG AACGCTACGA CCCCGAAGCA
CTGGGCATCT ATCGGCTGCA GGGGAACGAC GGGCTTTTTT CCTCCCTCGT GGAATTCCAC
GGCCTGCTCG TCAACGGGGA GTGGCAGCGC ATGCCGCTGC CGCGCGCCCC CCTCAACGAG
GTCCTGGCCA CCACCCGGCC CTTCTTCGGC AACGAGGCCA TGGAATACCG GGCCGGCACC
CAGACCCGCA TTGGCGCCTT CCTCGGCATC AAGGAATACC CCACGCCCAC CGCGCCGGGC
ATGTTCAGCG CCCTGCTGAC CGCACCTTTC CCCTTCGTGC TCACGCAAAG CTTCACCTTC
CTGGCCAAGA GCACGGCCAC CGACATGATG AGCCGCCAGC ATCACCGGAT GGCCGCCGCC
GGTGACCTCG CAGTCTCGCA GGCCGAGGAA CTCAAGGACG CACTGGACGA CCTGATGAGC
AATCGCTTCG TGGTGGGCGA CCACCATTTC AGCCTGCATG TGCTGGCCGA CACCTACGAC
GGCCTCAGCG AGGCCGAGGG CCGGCCCCGT CTGAAGCAAC TCAACGACAA CGTCGCCCGC
GCCCGCTACC TGCTGGGCGA CGCGGGAATG GTGGTGGCCC GCGAGGACCT CGCGCTGGAG
GCGGCCTTCT GGGCGCAGCT GCCGGGAAAC TTCGGCTACC GCAGCCGCAA GGCGCCCGTC
ACCAGCCGCA ACTTCGCCGC CATGTCGCCC TTCCACAATT TCCCGACCGG CCGGGCAACG
GGCAACTACT GGGGCGATGC GCTGACCATG TTCACCACGC GCGCGGGCTC GCCCTACTAC
TTCTCGCTGC ATGCGAGCGA CCCGCGCAGC CGGGACGGCG GCAGCCGCCG CGATGTCGGA
CACATCACGG GCGTGGGACC GGTCGGGACC GGCAAGACCA CGCTGCTGGG CTTCTGCATG
GTGGCGATCT GCAATCGCCT CGACGCCACA CAAGTGGTCT TCGACAAGGA TGAAGGGCTG
CATATCCTGG TGCGGGCCCT GGGCGGCCAG TACCTCCCAC TCAAGAACGG GGCACCCACC
GGCTGCAATC CGTTGCAGCT CGACGATTCG ATCGCCGACA ACGTCGAGTT CATGCGGCAC
TGGCTCAGGC GCCTCGTGAT GCGCACGCCG GGCGAGACCC TGACCGTCCG GCAGGAAGAC
GATCTCGACC AGGCACTGCG CGGCACCCTG AAGCTCGAGC GCTCTTTCAG GCGCCTGTCC
CGGCTCGCCG CCTTCCTCGA CATCACGGAT CCGGAGGGGA TGCACGCGCG CCTTCGGCGG
TGGTGCGCCT CGGAGCACGG CGACTATGCC TGGGTCTTCG ACAACGAGCA CGACCACGTG
GCCCCGCTGC TTGCCCGGCA CGCCCTCGTG GGCTTCGATG TGACCGACTT CCTGGACAAC
GAGGTCGTGC GCGCCCCGCT GACCCTGTAC CTCTTTCATC TCGTGAACCG GATGGTGGAC
GGCCGCCCGC TGGTGTGCTG GATGGACGAG TTCGCCAAGC TGTTGAGCGA TCCGGCCTTC
GCGAAGTTCG CCAAGAACGG CCTGGAGACC TGGCGCAAGA AGAACGCGAA TATCGCCACG
TTCACCCAAA GCACCAGCCA CGTGCTCGAT TCCGGCATTG CCCGCGCGAT CGTCGAGCAG
ACGCCGACGA AGATCCTGTT CCCCAATCCG GAGGCGGACT ACGACGAATA CACCCGGGGC
TTCAACCTGA CCGACCGGGA GTTCGCGCTG ATCAAGCAGG AGATCGAGCC TGGCTCTCGC
CAGTTCCTTA TCAAGCAGAA CCATGTCAGC GTGGTCGCGC AGCTCGATCT CCATGGATTC
GACGACGCCT TGCACGTCAT CTCCGGGCGC ACCGGCAACG TCCGCCTCAT GCGTGAACTC
ATCGCGATCT GCGGACCGGA TCCCGCCCAA TGGCTGCCGT CTTTCCGCAG GGCGCTTGCG
AACAACCCTT CCCGTTCACC CTCACACCAG GAGATCTCCC ATGCGTAG
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| Protein sequence | MKLLSRPEHA LRREAGAATM IPLSAHVDEH VALTRAGDYV QTLRLAGTSF ESADDEDINS
WHERLNVLLR NIASPNLALW THVIRRREMA YPAGRTTPGF ADEIEQRYRR KMAGERLMVN
ELYLSVVFRP QPTRIGNAAL RLFKRADPEG ARAELRDALD ACSKLRQELL AALERYDPEA
LGIYRLQGND GLFSSLVEFH GLLVNGEWQR MPLPRAPLNE VLATTRPFFG NEAMEYRAGT
QTRIGAFLGI KEYPTPTAPG MFSALLTAPF PFVLTQSFTF LAKSTATDMM SRQHHRMAAA
GDLAVSQAEE LKDALDDLMS NRFVVGDHHF SLHVLADTYD GLSEAEGRPR LKQLNDNVAR
ARYLLGDAGM VVAREDLALE AAFWAQLPGN FGYRSRKAPV TSRNFAAMSP FHNFPTGRAT
GNYWGDALTM FTTRAGSPYY FSLHASDPRS RDGGSRRDVG HITGVGPVGT GKTTLLGFCM
VAICNRLDAT QVVFDKDEGL HILVRALGGQ YLPLKNGAPT GCNPLQLDDS IADNVEFMRH
WLRRLVMRTP GETLTVRQED DLDQALRGTL KLERSFRRLS RLAAFLDITD PEGMHARLRR
WCASEHGDYA WVFDNEHDHV APLLARHALV GFDVTDFLDN EVVRAPLTLY LFHLVNRMVD
GRPLVCWMDE FAKLLSDPAF AKFAKNGLET WRKKNANIAT FTQSTSHVLD SGIARAIVEQ
TPTKILFPNP EADYDEYTRG FNLTDREFAL IKQEIEPGSR QFLIKQNHVS VVAQLDLHGF
DDALHVISGR TGNVRLMREL IAICGPDPAQ WLPSFRRALA NNPSRSPSHQ EISHA
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