Gene Vapar_5802 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5802 
Symbol 
ID7974923 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand+ 
Start bp504945 
End bp505634 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content68% 
IMG OID644796383 
ProductDimethylmenaquinone methyltransferase 
Protein accessionYP_002947657 
Protein GI239820472 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0684] Demethylmenaquinone methyltransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.965352 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGAGCC CCTCCCCCGA TATCGTGCGC GACTTCCCTC GCATTTCCCC CGACCTGGTC 
GCGCAGGCCT CGGCGTTCCA GCCCGCCATC CTGGCCGACG TCGCAGGCCG CCGCGGCGCC 
CTGCACGGCC GCATCGCGGC CCTGCGCCAC CGCATGAAGC TGGCCGGCAG CGCGCTCACG 
GTCGAAGTGC GGCCGGGCGA CAACCTGATG ATCCACGCCG CCATTGCGCT GGCCAGGCCG 
GGCGACGTGC TGGTGATCGA CGGCAAGGGC GACCAGACCG CTGCCCTCAT GGGCACCATC 
ATGATGAACG CCTGCCGGCA GGTCGGCATC GCCGGCGTGG TGGTCGACGG CGCGGTGCGC 
GACAGCCTGG AGATCGACGA GATGGACTTT CCCGTCTTTT CGGTCGGGAC CAATCCCAAC 
GGCCCGACCA AGCTGGCTTC AGGCCGGATC GGGCACTCCG TGTCTGTCGG CGGCGTGACC 
GTTCGCTCCG GCGACCTCGT GGTTGGCGAT GCCGACGGCG TGGTCGTCAT CGAACGCGAA 
AGAGTGGAAG CGCTTCTCGA GGCCGCAGGC AGGAAGGTCG AGGACGAGGC CGTGCGGATC 
GAGGCAATCA AGAAGGGCAA CACAGCCGCC AAGTGGCTGG ACTCCGCGCT GCGCAGCGCA 
GGTGTACTTA GAGAGAACGA GACGCTCTAG
 
Protein sequence
MKSPSPDIVR DFPRISPDLV AQASAFQPAI LADVAGRRGA LHGRIAALRH RMKLAGSALT 
VEVRPGDNLM IHAAIALARP GDVLVIDGKG DQTAALMGTI MMNACRQVGI AGVVVDGAVR 
DSLEIDEMDF PVFSVGTNPN GPTKLASGRI GHSVSVGGVT VRSGDLVVGD ADGVVVIERE 
RVEALLEAAG RKVEDEAVRI EAIKKGNTAA KWLDSALRSA GVLRENETL