| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5795 |
|---|
| Symbol | |
|---|
| ID | 7974916 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | - |
|---|
| Start bp | 497538 |
|---|
| End bp | 498497 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644796376 |
|---|
| Product | amidohydrolase 2 |
|---|
| Protein accession | YP_002947650 |
|---|
| Protein GI | 239820465 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGGTC CCGGCCAAGG CGTCAGAATA GGCGAGCCCC CATCCTTCAC GAAGCCCATG
AAAGCCATCG CGTCCGCCAC GGCCCTTGTG CTGGCCACCT GCCTTGCCGC GGCGCCTCGC
GCCCAGCCTG CGCAGACTTC GCCGCCCTAT GCCGGTCCGC TGTTCGACAC GCACCTGCAC
TACAACCAGG AAGCCTGGGA CGGCAACACC GGGCCCTACC CGCCCGCCGA GGCGCTCGCG
CGCATGCAGC GCAACAACGT GACGGCGATC ATTGCCAATT CGAGGCCCAA CGCCGGCACG
CAAACGCTGG CCGCGGCGCG CGAGACCCGC GCCGCGGGCG TGGCCGTGGT GCCCTTCGTG
CGGCTGTACC GCAACCGCGA GGACTACAGC AACTGGTTCC GCGACGAGAG CATCCACGAG
ATGGTGCAGG CCGAGCTGGC GCGCGGCACC GCGAGCGGGC CCTACCGCGG GATCGGCGAG
TTCCACCTGT ACGACAGCGC CAATGCCAAC GGCCCGGTGG CCAAGAAGCT GGTCGCGCTG
GCGGAGCGGC AGAAGCTCGC GGTGCTCGCA CACGTCGACG ACGTGGCGGT CGACCTGTTG
ATGGCCAACG CGCCGTCGAA GGGCCGGGAC CTTCGGCTGA TCTGGGCCCA CACGGGCATC
GGCGGCGCGC CCATCGAGCG GGTGCAGGCG CTGCTGGAAC GCTATCCGCT GCTGATGGGC
GAACTCTCGT ACCGGCCGGG CCTGGCCTGC GAAGGCGGCA GGCTGTGCCC CGAGTGGCGC
GCGCTGATCC TCAAGTACCC GGAGCGCTTC ATGATCGGCT CCGACACCTG GGTGAACCAG
CGCTGGAGCG CCTACGACGA GCTCATGCGC GGCTACCGCA CCTGGCTCGG CGACCTGCCG
CCCGACGTGG CGAAACGCAT CGCCTGGGGC AACGCGGCCG CGCTGTTCGA GCTGCGCTGA
|
|---|
| Protein sequence | MAGPGQGVRI GEPPSFTKPM KAIASATALV LATCLAAAPR AQPAQTSPPY AGPLFDTHLH
YNQEAWDGNT GPYPPAEALA RMQRNNVTAI IANSRPNAGT QTLAAARETR AAGVAVVPFV
RLYRNREDYS NWFRDESIHE MVQAELARGT ASGPYRGIGE FHLYDSANAN GPVAKKLVAL
AERQKLAVLA HVDDVAVDLL MANAPSKGRD LRLIWAHTGI GGAPIERVQA LLERYPLLMG
ELSYRPGLAC EGGRLCPEWR ALILKYPERF MIGSDTWVNQ RWSAYDELMR GYRTWLGDLP
PDVAKRIAWG NAAALFELR
|
|---|
| |