| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5766 |
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| Symbol | |
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| ID | 7974887 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 472015 |
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| End bp | 472842 |
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| Gene Length | 828 bp |
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| Protein Length | 275 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644796347 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002947621 |
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| Protein GI | 239820436 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.708283 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCCCA TGGATTTTTC CGCCTTCGAT TTCTCGGGCC GCCACGTGGC CGTGGCCGGC
GGCTCCAGCG GCATCAACTT CGGCATCGCG CAGGCTTTTG CGCGCGCCGG TGCGCGCCTC
ACGGTGCTCA GCCGCTCGGC CGACAAGGTG GCCGCGGCGG CGCAGCAGCT CGAGGCGCTC
GGCACGCAGG CCCTGGGCAT TGCGGCCGAC GTGCGCCAGC CCGAGGCGCT GGAACGCGCC
TTCGCGCAGG GCGCCGAGCG CTTCGGCCCC ATCGACGTGC TGGTCTCGGG CGCCGCGGGC
AACTTTCTTG CGAGCGCGCT CGACATGTCG CCCAATGCCT TCAAGACGGT GGTCGACATC
GACCTGCTGG GCAGCTTCAA CGTCGCGCGG CTCGCGCATG CGCACCTGCG CCGGCCCGGC
GCCTGCGTGA TCCAGATCTC GGCCGGCCAG GCCTTCACGC CCACGCCCTT CCAGGCCCAT
GTGTGCGCGG CCAAGGCGGG TGTCGACATG CTGACGCAGG TGCTCGCGCT CGAGTGGGGC
CCGCAGGGCA TCCGCATCAA CTCCATCGTG CCCGGGCCGA TCGCCGACAC CGAGGGCCTG
AAGCGGCTCG CGCCCACCGA AGGCACCATG GCCGCGATGG CCGATCGCGT GCCGCTCAAG
CGCCTGGGCC GCATCGAGGA CATCAGCCGC ATGGCGATGA TGCTCGCGAG CGACTGGGGC
TCCTACATCA CGGGCGCCGT CATTCCCGTG GACGGCGGCC TGGCGCTGAC CGGGCCGCGC
GATTTCACGG CGGCAGCGGC CGCGTCGAAG CGGGGGTCCG CGCCATGA
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| Protein sequence | MNPMDFSAFD FSGRHVAVAG GSSGINFGIA QAFARAGARL TVLSRSADKV AAAAQQLEAL
GTQALGIAAD VRQPEALERA FAQGAERFGP IDVLVSGAAG NFLASALDMS PNAFKTVVDI
DLLGSFNVAR LAHAHLRRPG ACVIQISAGQ AFTPTPFQAH VCAAKAGVDM LTQVLALEWG
PQGIRINSIV PGPIADTEGL KRLAPTEGTM AAMADRVPLK RLGRIEDISR MAMMLASDWG
SYITGAVIPV DGGLALTGPR DFTAAAAASK RGSAP
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