Gene Vapar_5756 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5756 
Symbol 
ID7974877 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand+ 
Start bp461964 
End bp462608 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content68% 
IMG OID644796337 
Productbifunctional deaminase-reductase domain protein 
Protein accessionYP_002947611 
Protein GI239820426 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0262] Dihydrofolate reductase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.688009 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAAAGC TTCGATTCAG GATCTCGATG TCGCTGGACG GTTTCGTCGC CGGGCCGAAC 
CAGAGCTTGC GGGAGCCGCT GGGCATCGGC GGCGAGCAGT TGCACGAGTG GGTGTTCCCG 
CTCGAAGCCT GGCGGCGTCC ACATGGCCTG GAGGGCGGCG TGGTGAACGA GAGCACGCCG 
GTGGTGGAGG AAGAGCTTGC CGGCATCGGC GCGACCATCA TGGGCCGCAA CATGTTCGGC 
GGCGGCCCGG GACCGTGGAG CACGACCGCC CCCTGGGACG GCTGGTGGGG CCGCAATCCG 
CCGTTCCATC ACCCGGTGTT CGTGCTGACG CATCACGCGC GCGACCCGTT GGTCATGGAA 
GGCGGCACGC GCTTCAGCTT CGTGACCGAC GGCATCGAGA GCGCGCTGGA CCAGGCCCGC 
CGCGCGGCAG GCGGCAAGGA CGTGGCGCTC GCGGGCGGCG CACGCGCTGC GCAGCAATAC 
CTGAAGGCCG GCCTGGTCGA TGAAATGCAG CTCCACCTGG CGCCGATCCT GCTCGGCGGT 
GGCGAGCGCC TGTTCGACAA TGCCGAGGCG CTGGGCGCCC TCGCGCTGGC GAAAACGGTC 
ACAGCGCCGG ATGCGATTCA CATGAAATTC AAAAGGCGGC CATGA
 
Protein sequence
MSKLRFRISM SLDGFVAGPN QSLREPLGIG GEQLHEWVFP LEAWRRPHGL EGGVVNESTP 
VVEEELAGIG ATIMGRNMFG GGPGPWSTTA PWDGWWGRNP PFHHPVFVLT HHARDPLVME 
GGTRFSFVTD GIESALDQAR RAAGGKDVAL AGGARAAQQY LKAGLVDEMQ LHLAPILLGG 
GERLFDNAEA LGALALAKTV TAPDAIHMKF KRRP