Gene Vapar_5749 details

Gene Information

• Locus tag: Vapar_5749
• ID: 7974870
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012792
• Strand: +
• Start bp: 455659
• End bp: 456324
• Gene Length: 666 bp
• Protein Length: 221 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 644796330
• Product: Carboxymuconolactone decarboxylase
• Protein accession: YP_002947604
• Protein GI: 239820419

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.031577
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACACCA CACGCACCGC ATCCGAAACG CTTTCGCTGC GCCAGCAATC CATCATCCCG 
ATTGCGGCGT TCGCAGCGGC GGGCGACATC GCCCGCCTGA ACACGGCGCT CGAACAGGGG 
CTCGATGCCG GCCTGGCCAT CAACGAGGCA AAGGAGATCC TGGTGCAGGT GTATGCCTAT 
GCCGGATTCC CGCGCAGCCT CAATGCGCTG GGCGAACTGA TGAAGGTCGT GGAAGCCCGC 
AAGCAGCGCG GTGCCCAGGA CAAGCAGGGC CAACTGCCCT CGCGCCCCAT TCCGAAGGGC 
GACGCACTGC TGGCGGCCGG CACGGCCAAC CAGACGAAGC TCGCCGGAGC GCCGGTCAAG 
GGCGCATTGT TCGATTTCGC GCCGGCCATC GACGAATACC TGAAGACGCA CCTCTTCGGC 
GATGTGTTCG AGCGCGACAA CCTCGACTGG CCGAGCCGCG AGCTGGCGAC GGTCGGCATG 
CTGTCGGCGC TTGCGGGCGC CGAATCCCAG CTTCAGTCGC ACATGCGCAT CAGCATGAAC 
GTGGGCATCA GTGCCGCCCA GCTCGACCAG CTGGCGCAGG TGCTTGCAGA GCGCGTGGAT 
GCGGAGATGG GCCGCAGGGC TCGCGAGGCG CTGGCGCGCC AGCTGGCCAC GCGCGCTGGC 
AGCTGA 

 

Protein sequence

MNTTRTASET LSLRQQSIIP IAAFAAAGDI ARLNTALEQG LDAGLAINEA KEILVQVYAY 
AGFPRSLNAL GELMKVVEAR KQRGAQDKQG QLPSRPIPKG DALLAAGTAN QTKLAGAPVK 
GALFDFAPAI DEYLKTHLFG DVFERDNLDW PSRELATVGM LSALAGAESQ LQSHMRISMN 
VGISAAQLDQ LAQVLAERVD AEMGRRAREA LARQLATRAG S