Gene Vapar_5719 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5719 
Symbol 
ID7975772 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand- 
Start bp432810 
End bp433526 
Gene Length717 bp 
Protein Length238 aa 
Translation table11 
GC content68% 
IMG OID644796300 
Producttranscriptional regulator, GntR family 
Protein accessionYP_002947574 
Protein GI239820389 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCATAAAA TTAACTCCAT GCACAAACCA GAAGTTACCG CCAACGAGCC GCCACTGGCC 
GAGCAGGCAT TCAACCGTTT GCGGCAGGAC GTCCTGGCCG GCACCTTCGA GGCCGGCGCC 
AAGCTCAAGC TCGACGAGCT CCAGTCGGCC TATGGCTACT CGAGCAGTCC GCTGCGCGAG 
GCGCTCAGCC GCCTGGCGCA GGAAGGGCTC GTGCGCGCCG ACGAGCGCCG CGGCTTTCGC 
GTGGCGCCGA TCTCCGAAGA GGACCTGGCC GACATCACGC GCATGCGCAT CATGCTGGAC 
GTGCCCGCGC TGCGCGAATC CATCGCGCAC GGCGACGACG CCTGGGAGGC CACGGTACTC 
GCCGCTTTCC ATCGGTTGGA GAAAGTCGAG TCGCGCCTGA GCGACGGGCC GGTCATTCTC 
GATGGCGAGT GGTCGCAGCT GCACCGCAGC TTCCACCTCT CGTTGCTGGC CGCCTGCCCG 
TCGCTGCGCC AGCGCGGCTG GGGCGCGAGC CTGTTCGACC AGGCCGAGCG CTACCGGCGG 
TTTTCCGCGC GCCACCGGAA GACCGCGCGC CGCAAGTCGA GCGAGCACAA GAAGATCATG 
GACGCCGCCT TGCGCCGCGA TGCGGACACG GCCTGCGCGC TGCTGGAGGA GCACATCCTG 
AGCACGCAGC GCAACGTGAT TGCCGCACTC AAGGCGGCCC AGGCCGCGCA ATCCTAG
 
Protein sequence
MHKINSMHKP EVTANEPPLA EQAFNRLRQD VLAGTFEAGA KLKLDELQSA YGYSSSPLRE 
ALSRLAQEGL VRADERRGFR VAPISEEDLA DITRMRIMLD VPALRESIAH GDDAWEATVL 
AAFHRLEKVE SRLSDGPVIL DGEWSQLHRS FHLSLLAACP SLRQRGWGAS LFDQAERYRR 
FSARHRKTAR RKSSEHKKIM DAALRRDADT ACALLEEHIL STQRNVIAAL KAAQAAQS