| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5700 |
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| Symbol | |
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| ID | 7975753 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 415016 |
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| End bp | 415819 |
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| Gene Length | 804 bp |
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| Protein Length | 267 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644796282 |
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| Product | Shikimate dehydrogenase substrate binding domain protein |
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| Protein accession | YP_002947556 |
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| Protein GI | 239820371 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTCCCCG CAAACCCCAG CGGCGCGACG CGCCTCGTGC CGATCCTCGC GCACCCGGTC
GACCACGTGC GCGCGCCGCG CATCTACAAC CCGGCCTTCG CCGCCGCCGG CCTCGACTGG
TGCCTGGTGC CGATGGGCGT GCATCCCGGC GACTTCGCAG CCACCGTGGC GCAGCTCGCG
CGCGTGGCCA ACCTGCAGGG CCTGAACCTC ACGATCCCGC ACAAGGCCGC GGCGCATGCG
CTGTGCGCGC GCCTCGGCCC CGAGGCGCGG CGCACCGGCG TGGTCAACAC CATGCGCATC
GATGCCGATG GCCAATGGTC GGGCGAGAGC TTCGATGGCG TGGGCTTTGT CGATGCCGCA
CGCGCACACG GCGTGCTGCG CACCGATCGG CCGGTGGTGC TGGTGGGCGC GGGCGGTGCG
GGCACCGCCA TTGCCTTCGC GCTGGCCGCG GTCGGCCTGC GCGAGCTGCA CGTCGTCAAT
CGCGAAGCCG AGCGCGCGCA GCAGCTGTGC ACCGAATTGC GCAAGGCGTA TCCGGACATC
CATGCCGACA CCAGCGCCGG CAGCCTGGGG CGCGCCGGCC TCGCCATCAA CGCCACCTCG
GTCGGCCTGC ATGCGGGCGA CCCGATGCCC TTCGACCCGG CGCAGCTGCC GGCCGATGCG
GCGCTGTTCG ACATCATCGC CGCGCGCGAC ACCGAGCTCA TGGCCGCCTG CGCCGCGCGC
GGGCTGCGGG TGGTCGGCGG CAAACCCATG ATCGACCACC AGGTCGCCGC GCAGATCGCT
TTCTGGCGCG GCGCCGCCGC ATGA
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| Protein sequence | MVPANPSGAT RLVPILAHPV DHVRAPRIYN PAFAAAGLDW CLVPMGVHPG DFAATVAQLA
RVANLQGLNL TIPHKAAAHA LCARLGPEAR RTGVVNTMRI DADGQWSGES FDGVGFVDAA
RAHGVLRTDR PVVLVGAGGA GTAIAFALAA VGLRELHVVN REAERAQQLC TELRKAYPDI
HADTSAGSLG RAGLAINATS VGLHAGDPMP FDPAQLPADA ALFDIIAARD TELMAACAAR
GLRVVGGKPM IDHQVAAQIA FWRGAAA
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