Gene Vapar_5693 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5693 
Symbol 
ID7975746 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand
Start bp407894 
End bp408952 
Gene Length1059 bp 
Protein Length352 aa 
Translation table11 
GC content68% 
IMG OID644796275 
ProductRieske (2Fe-2S) domain protein 
Protein accessionYP_002947549 
Protein GI239820364 
COG category[P] Inorganic ion transport and metabolism
[R] General function prediction only 
COG ID[COG4638] Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTCCCGA AAAACACCTG GTACGTGGCC TGCACAGGCA ACGAGATCGA CGACAAGCCC 
CTGGGCCGCA AGATCTGTGG CGAGAACCTG GTGCTCTACC GCGCAGCGGA AGGCAAGGCC
ACGGCGCTGG AAGACTTCTG CCCGCACCGC GGCGCGCCGC TGTCGCTGGG CCGCGTGGTC
GAGGGCAAGC TGGTGTGCGG CTACCACGGG CTGGAGATGG GCTGCGACGG CAAGACCGTC
GCCATGCCCG GGCAGCGCGT GCGCGGCTTT CCGCCGATCC GCTCCTTCCC GGTGATCGAG
CGCTACGGCT TCGTCTGGAT CTGGCCCGGC GACCCTGCGC TGGCCGACCC GGCCAAGCTG
CATCACCTCG AATGGGCCGA AAGCCCCGAC TGGGCCTACG GCGGCGGCCT GTTCCACATC
CAGTGCGACT ACCGCCTGAT GATCGACAAC CTGATGGACC TGACGCACGA GACCTACGTG
CACTCGACCA GCATCGGCCA GAAGGAAATC GACGAGACGC CCACCACCAC CAAGACCGAG
GGCGACCAGG TCACCACCAG CCGCTTCATG GAGAACATCT CGGCGCCGCC CTTCTGGCGC
ATGGCGCTGC GCGGCAACCA CCTGGCCGAC GACGTGCCGG TCGACCGCTG GCAGATCTGC
CGCTTCACGC CGCCCAGCCA CGTGCTGATC GAAGTGGGCG TCGCCCACGC CGGCAAGGGC
GGCTACGACG CCGATCCGGC GCACAAGGTG TCGAGCATCG TGGTGGACTT CATCACGCCC
GAGACCGAGA CCTCGCACTG GTACTTCTGG GGCATGGCGC GCAACTTCCA GCCGCACGAC
AAGGCGCTGA CCGCATCGAT CCGCGAAGGC CAGGGCAAGA TCTTCAGCGA AGACCTGGAG
ATGCTCGAAT CCCAGCAGCG CAACCTGCTC GCGCATCCGA ACCGCTCGCT GCTGAAGCTC
AACATCGACT CGGGCGGCGT GCAGTCGCGC CGCGTGCTGG AGCGCCTGAT CGCGCAGGAA
GGCCAGGCCC CGGCGACGGC TCCGGCAGGT GCGGCATGA
 
Protein sequence
MFPKNTWYVA CTGNEIDDKP LGRKICGENL VLYRAAEGKA TALEDFCPHR GAPLSLGRVV 
EGKLVCGYHG LEMGCDGKTV AMPGQRVRGF PPIRSFPVIE RYGFVWIWPG DPALADPAKL
HHLEWAESPD WAYGGGLFHI QCDYRLMIDN LMDLTHETYV HSTSIGQKEI DETPTTTKTE
GDQVTTSRFM ENISAPPFWR MALRGNHLAD DVPVDRWQIC RFTPPSHVLI EVGVAHAGKG
GYDADPAHKV SSIVVDFITP ETETSHWYFW GMARNFQPHD KALTASIREG QGKIFSEDLE
MLESQQRNLL AHPNRSLLKL NIDSGGVQSR RVLERLIAQE GQAPATAPAG AA