| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5635 |
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| Symbol | |
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| ID | 7975247 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 341556 |
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| End bp | 342512 |
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| Gene Length | 957 bp |
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| Protein Length | 318 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644796219 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_002947493 |
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| Protein GI | 239820308 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCACG TCATTCTCAA ACTCCTCGGC CAGCGCATCG CGCTGGCGCT CGTGTCGCTG
CTGGCGGTCT CGGTGGTCGT GTTCTCGATC ACTGCGGTGC TGCCCGGCGA CGCCGCGCAG
GAGCAGCTCG GCCAGGACGC CACGCCCGAG GCGGTGGCCG CGCTGCGCGC GCAGATGGGC
CTGGACGTGC CGGCGCCCGC GCGCTATGCC AAGTGGCTGC TCGGCATGGC GAAGGGCGAC
CTCGGCCGCT CTGCGACCAC GCAGATGCCG GTGTCCGAGC TGGTGGCGAG CCGCCTGCCC
AACTCGCTGC TGCTGGCCGC GGTCACGGCC CTGTTCTCGG TGCCGATCGC GCTGGCGCTG
GGCATCGCCT CGGCCGTGTG GCGCGGCTCG TGGTTCGACC GCGCGGCCTC GACGGCGGCG
GTGGGCGTGG TGTCGGTGCC GGAGTTCCTG GTGGCGACGC TGGCGGTGCT GGTGTTCGCG
GTGCAGCTGC ACTGGCTGCC GGCGCTCTCC TTCGTCAACG ACATCGAGTC ACTGGGCCAG
CTGCTGCGCG CCTTCGCCAT GCCGGTGCTG GTGCTGTGCT GCGTGATCGT CGCGCAGATG
ATGCGCATGA CGCGCGCCGC GGTGATCGAC CAGCTCGAGG CGCCCTACAT CGAGATGGTG
CGGCTCAAGG GCGCCTCGCC GATGCGCATG GTGCTGGCGC ACGCGCTGCC CAATGCGGTG
GGGCCGATCG CCAACGCGGT GGCGCTGAGC CTGTCGTACC TGCTGGGCGG CGTGATCATC
GTCGAGACCA TCTTCAACTA CCCGGGCATC GCCAAGCTGA TGGTCGACGG CGTGTCGCAG
CGCGACATGC CGCTGGTGCA GACCTGCGCC ATGATCTTCT GCTGCGCCTA CCTGATCCTG
GTGACGACGG CCGACATCTT CGGCATTCTT GCCAACCCGC GGCTGCGGCA CCGCTGA
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| Protein sequence | MNHVILKLLG QRIALALVSL LAVSVVVFSI TAVLPGDAAQ EQLGQDATPE AVAALRAQMG
LDVPAPARYA KWLLGMAKGD LGRSATTQMP VSELVASRLP NSLLLAAVTA LFSVPIALAL
GIASAVWRGS WFDRAASTAA VGVVSVPEFL VATLAVLVFA VQLHWLPALS FVNDIESLGQ
LLRAFAMPVL VLCCVIVAQM MRMTRAAVID QLEAPYIEMV RLKGASPMRM VLAHALPNAV
GPIANAVALS LSYLLGGVII VETIFNYPGI AKLMVDGVSQ RDMPLVQTCA MIFCCAYLIL
VTTADIFGIL ANPRLRHR
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