| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5632 |
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| Symbol | |
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| ID | 7975244 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 337699 |
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| End bp | 338364 |
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| Gene Length | 666 bp |
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| Protein Length | 221 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644796216 |
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| Product | haloacid dehalogenase, type II |
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| Protein accession | YP_002947490 |
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| Protein GI | 239820305 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01428] 2-haloalkanoic acid dehalogenase, type II
[TIGR01493] Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCTTCC GCCCCAAGTA CGTGACCTTC GACTGCTACG GCACCCTCAC CCGGTTCCGC
ATGAAGGAGC TGACCACCGA CCTCTTCGCC GACCGCATCC GGCCCGAGCA GATGGCGCAG
TTCGTCACCG ATTTCACTGC CTACCGCTTC GACGAAGTGC TGGGCGCCTG GCAGCCCTAC
GAGGTGGTGC TGAAGAATGC GGTGCGACGC CTGTGCAAGA AGTGGAAGAT CCAGTACTTC
GACAGCGACG GCCAGGCCTA CTACGACGCC GTGCCCACCT GGGGTCCGCA TGACGACGTG
GCCGCAGGCC TGGCCAAGGT GGCCAAGGAA ATCCCGCTGG TCATTCTCTC CAACGCCTCG
GACGACCAGA TCCAGAAGAA CGTGGCGATG CTCGGCGCGC CCTTCCACCG CGTCTACACC
GCGCAGCAGG CCCAGGCCTA CAAGCCGCGG CTGCAGGCCT TCGAATACAT GCTCGATTCG
CTCGGCTGCA ACCCGGAAGA CGTGCTGCAC GTGTCGTCCA GCCTGCGCTA CGACCTGATG
TCGGCCGACG ACATCGGCAT CGTCAACAAG GTGTTCGTCA ACCGCGGCCA CGGCCCGGGC
AACCCGGCCT ACCGCTACAC CGAGATCCAG GACATCGGCG GCCTGCCCGG CGTCGTCGGC
CTCTGA
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| Protein sequence | MTFRPKYVTF DCYGTLTRFR MKELTTDLFA DRIRPEQMAQ FVTDFTAYRF DEVLGAWQPY
EVVLKNAVRR LCKKWKIQYF DSDGQAYYDA VPTWGPHDDV AAGLAKVAKE IPLVILSNAS
DDQIQKNVAM LGAPFHRVYT AQQAQAYKPR LQAFEYMLDS LGCNPEDVLH VSSSLRYDLM
SADDIGIVNK VFVNRGHGPG NPAYRYTEIQ DIGGLPGVVG L
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