| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5622 |
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| Symbol | |
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| ID | 7975234 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 326696 |
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| End bp | 327595 |
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| Gene Length | 900 bp |
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| Protein Length | 299 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644796206 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_002947480 |
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| Protein GI | 239820295 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.812552 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGCAC CGGACTTCAG AACGCTCCGC TACTTCGTGG CCGTGGCCGA GGAACGCAGC
GTGGGCAAGG CGGCACGTCG GCTCAACATG GCCCAGCCGC CGCTGTCGGT CCACATCAAG
AACCTGGAGG CGGCGGTGGG CACGCCGCTG TTCCGCAGGG CGGCGCGCGG CATGGAGATC
ACCGACGCCG GCCATGCGCT CTTCCAGCGT GCCAAGGAGG CGCTGCTGCT TGCCAACGAA
GGCTTCGACG CGGCACGGGC GATCGGCTCG GGCAGCAGGG GCCGGCTCAC CGTCGGCACC
ATGGTCGTGC TGTCCTACCT GGTGCTTCCT CGCCTGGAAA ACACGCTTCG GGCGAAGCTG
CCGGACGTGG AGATCCAGTA CGTGGAGCTG AACGCTGCCA ACAACGTCTC GGCCCTCACT
GATTCGCAGG TGTCGGTGGC GATCTGCATC CCGCCCATCG CCCACGCGGG CATTGCGGCC
GAACGCATCG GAACCCAGCC GCTGATGCTG GCCGTGCGCG CGGATTCGCC GCTGGCCCGC
ATGTCCAGCA TTCCGATGGA GCGGCTGTCA GGCATGCCCC TCATCGGGCT GCCCGTGCCC
GATGGCGACG TCGACAAATC GCTCATTGCC TCGATGCTTC GGCGGCACGA TGTCAGCATG
CCGATCGCGC AGCGGGTCGA GACCATGGTG TCGGCGTTGG CGCTCGTCCT CGCAGGCAGG
GGCGTGGCCA TCCTGCCCGC CTGCGCCCGG ATCGGCCGGC CTCCGGGCGT GGTGTTCCGC
CCCTTGCGGA ACGTCGATGC AAGGATGGAC ATCGCTGCCT GCTGGCGCAG CGATTGGCAG
AGTCCGCTCA TCGAACCCTT CCTGGCCTGC GCGCGCGCCT CTCTGCGGCA AGCTGCGTAG
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| Protein sequence | MAAPDFRTLR YFVAVAEERS VGKAARRLNM AQPPLSVHIK NLEAAVGTPL FRRAARGMEI
TDAGHALFQR AKEALLLANE GFDAARAIGS GSRGRLTVGT MVVLSYLVLP RLENTLRAKL
PDVEIQYVEL NAANNVSALT DSQVSVAICI PPIAHAGIAA ERIGTQPLML AVRADSPLAR
MSSIPMERLS GMPLIGLPVP DGDVDKSLIA SMLRRHDVSM PIAQRVETMV SALALVLAGR
GVAILPACAR IGRPPGVVFR PLRNVDARMD IAACWRSDWQ SPLIEPFLAC ARASLRQAA
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