Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5606 |
Symbol | |
ID | 7975218 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | + |
Start bp | 313407 |
End bp | 314675 |
Gene Length | 1269 bp |
Protein Length | 422 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644796190 |
Product | peptidase M20 |
Protein accession | YP_002947464 |
Protein GI | 239820279 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.750571 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTGACC ACTCCCAAGC CCCAGCGCGC GACGTGCTGC GCCAATTCAT CGACAGCCAC TTCCAGGAAC AGGTCGAGAC CCTGGCGCAG CTGGTGCAAT GCCCGTCCGA CAACCCGCCC GGTGATTGCG CGCCGCATGC CGAAGTGGCG GCCCGCCTGC TCGAGGGCAT GGACCTGGTG GTCGAACGCC ATGCCGTGCC GCCTGCGTTC GCACAGCAGC ACGGCATGCG CAGCGTGACC AACCTCATCG TGCGCGAGCG TTTCGGCGAG GGGCCGGTGA TTGCCCTGAA CGCGCACGGC GACGTGGTGC CGCCGGGCTC GGGCTGGACC GGCTCGCCCT ACAGCGGCGA GGTGCGCGAC GGATGGCTGT ACGGGCGCGG CGCGGCGGTT TCCAAGTCGG ACTTCACCAC CTACGCCTTC GCGCTGCGTG CGCTGAAGCA GCTGCGCGCC AGCGGCACAC CGCTGGCCGG CACGGTCGAG CTGCACCTGA CCTACGATGA AGAGACCGGC GGCATGACCG GACCCGGCTG GATTCTTTCG CAAGGCCTGA GCCGCCCCGA CTACGTGATC TCCGCCGCTT TCTCGCACCA CGTTGTCGTG GCGCACAACG GCTGCCTGCA CCTGGAAGTG ATCCTGCGCG GCAAGTCGGC GCATGCGGCG CGGCCCGACA CGGGCGCCGA CGCCATCGAG GCTGCTGCGA CCTTGCTGCC CGCGCTGTAC CACTACCGCG ACCAGTTGGC CGCACGGCCC TCGCAGACCC CCGGCATCAC GCATCCGACG ATGGTGGTCG GGCTGATCCA GGGCGGCATC AACACCAACG TCGTGGCCGA CACGCTGAGC TTGCGCATCG ACCGCCGCAT CGTGCCGGAA GAGACGCCCG AAGCGGTCGA GGCGGAACTG CGGCAGGTCA TCGAAGACGC CTGCGCCACG CTGCCGGGCA TCGCCGTCGA GATCCGGCAG ATCCTGCTGG CCCGCCCGTT CGCGCCCGCA CCCGGTGCGG CTGAGTTTGC CGCCTTGATG TGCCGCGAGG CGAGCGCGGT CATGGGCAAG CCGGTGACAC CCATCGGCGT GCCGCTCTAC ACCGACGCGC GCCTCTACAG CGAAGCCGGC ATCCCGACCG TGATGTACGG CGCCGGCCCC GAGTCGCTGC TCGAAGCCAA CGGCCACCGC GCCGACGAAC GGGTTCCCCT CGACGAGCTG CGCAAGGCGA CCCTCGTCGT TGCCCACACG CTGTTGCAGC TCATGGTCCT GCCAAAGGAA ACCCGATGA
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Protein sequence | MTDHSQAPAR DVLRQFIDSH FQEQVETLAQ LVQCPSDNPP GDCAPHAEVA ARLLEGMDLV VERHAVPPAF AQQHGMRSVT NLIVRERFGE GPVIALNAHG DVVPPGSGWT GSPYSGEVRD GWLYGRGAAV SKSDFTTYAF ALRALKQLRA SGTPLAGTVE LHLTYDEETG GMTGPGWILS QGLSRPDYVI SAAFSHHVVV AHNGCLHLEV ILRGKSAHAA RPDTGADAIE AAATLLPALY HYRDQLAARP SQTPGITHPT MVVGLIQGGI NTNVVADTLS LRIDRRIVPE ETPEAVEAEL RQVIEDACAT LPGIAVEIRQ ILLARPFAPA PGAAEFAALM CREASAVMGK PVTPIGVPLY TDARLYSEAG IPTVMYGAGP ESLLEANGHR ADERVPLDEL RKATLVVAHT LLQLMVLPKE TR
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