| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5560 |
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| Symbol | |
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| ID | 7975417 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 263966 |
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| End bp | 271156 |
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| Gene Length | 7191 bp |
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| Protein Length | 2396 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644796144 |
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| Product | YadA domain protein |
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| Protein accession | YP_002947418 |
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| Protein GI | 239820233 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.503173 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAAGT CGTACCGCAG CATCTGGAAC GAGGCGTTGG GCGCCTGGGT CGCCGCATCC
GAAACCACCC GCGCGCGTGG CAAGCGAGGC GGCAGCCGGG TGGCCATTGC CGCGGCGGCG
AGCGTGCTCG GATTGCTATC GATCTCGGCG CAGGCGCAGT CGGTGAACTG CAATGTGTCG
CCTTGGAATG CGTACAGCGG CACGGCGTCC TGCATGGGCC TCAACTCCTC GGCCGCGGGA
ATCGGAGCCA CTGCGCTGGG CTCCCTCGCA GCTGCCGATG TGCTTGGTGC GCTCTCAGTG
GGGTATGCCG CCCATACCAC AGGACAGAAT GCCATCGGCT TGGGCTTTGG GGCCTATGCC
ACAAGCATCA ATTCGATCTA TCTGGGCGCA CGTACCGCCG CCGGTACCGG CGCCTTGGCT
GCGGGTGCTA TCGGGATCGG CACGGATGTG ACCGCCAGCG CGGGCAATGT CATTGCCATC
GGAACCCTGG CCCAATCCAG CGCGCTCAAC GCCGCGGCCA TCGGCATCAG AGCAAACGCC
GCCGGACAGG CGGCAGTCGC CATGGGTCAG GATGCGAACG CGCAGTCTGC GAACAGCGTT
GCCATTGGTT TGCAAGCCAC CACGTCAGGT TCGACCGGTG CAGTCGCGAT CGGCGCCCGC
TCCAGCACGA GTGGTATCAA CGCGACATCG ATCGGGGTCG TCGCAAATGC CACGAACACC
GATGCCCTCG CCGTCGGTAC GAACTCGGCC GCAACCGGGC TGCGCAGCAT CGCCGTTGGC
GCCGAGGCAT CTGCAAGCAT GCAGGACGCC GTCGCGCAAG GAACTCAGGC TAGCGCGTCC
GCAGTGAATG CCACCGCGAT AGGACATCTG GCAACGGCAA GCGACGACGC AGCCACCGCC
GTCGGCAACA GCGCCCGGGC GCTGGGGAAC AGTTCGCTCG CGCTCGGCGC GCAAGCGGTC
GCTGTCGGGA CCAGCACCGT GGCGGTCGGC CAGGGCGCCG GCGCAGGCTC GACGGTCGCC
AATACGGGTT CGACCGCCGT GGGCATTGCC GCCGGCACGC TGGTCAGCGG CGCGCAGAAC
ACCGCCATGG GCGGAGGCAT TGCGAGCGTG ATGCGAGGCG CAGGTTCAGG TGTCACGGGA
ACGCGCAACG TCGCCTTCGG TTCGGGCGAT GGCACGGTCG CCTACGACGC CAACCTGGAC
GCTTCGGCAG GCAGCTTGGT GAGCGGCAAC GACAACATCG CCATCGGCAC CAACGCAGGC
ATCGGCGTGG CGGGAAATGG AACCACGTCG ATCGGCTTGA GCGCGAATGC GAGCGCGAAC
AACGCAATCG CCCTCGGTTC GCTGGCAAAG GCATCGGCAG CAAACACTCT CGCGCAAGGC
ACCCTCGCCA CTGCAGGCGG CATCAACGCC ATCGCCATCG GTACCCAGGC GATCGCATCG
GCGGTCAATT CCATCAATCT TGGCGCGCGC ACGGCTGCAG GAGCGGGTGC CCTGGCGGAG
AGCGCCATCG CCATCGGCAC GGACGTGACC GCCTCTCAAG ATCGCGCTGT CGCCATGGGG
ATCGGAAGCC GGGCCACCGG CCTCGATGCG CTGGCGGCCG GTACCCGGGC CAATGCGGCG
GCCGACAACG CGACCGCGCT CGGCTCGGGC GGGACCACTG CCGCGACTGC CGTGCGCGCC
ACCGGCGTGG GTTCGCTCGC CATCGGCGGC AATGCCACCC TGGGTGCCTT TGCATCGGGC
GCCAATGCCA TCGCCATTGG CGGTGAATCC GTCGCCGATG CCGCTGATGC AGTCGCCATC
GGCCGGGCCT CCCGGGCCAC CGGCGGCCGC GCAGTCGCCA TCGGCTCGGG CAACGTCGCG
AGCGGCAACG GCGCCGTGGC AATCGGCGAT CCCAACACCG CGACCGGCAA CGGCGCGATT
GCCTCGGGCC TGGACAACAC CGCCACCGGC AATGGTTCGG TCGCAATGGG CAACACCAAC
ATGGTGGGCG GCGGCGGCCA GGCCGTGAGC ACCCCCGGCA CGGCGGCGCA GGGCGCGGTC
GGCATCGGCT ACCAAAACAC GGTGGTCGGC CAGGGCAGCG TGGCGATCGG CAGCACCAGC
AGCGCGCTGG CCGCGGGCGC GGTGGCGTTC GGCGACACGG CGGTGGCCAA CAACGCGGAC
GACGTGGCAC TGGGCTCGGG CTCCACGACG AGCAAGGCCA TCGGCACGGC CAGCGCCGTG
ATCGGCGGAA CCACCTACAA CTTCGCCGGC ACCACGCCAT TGAGCACGGT CAGCGTCGGC
GCACTGGGTG CCGAGCGCAC CATCACCAAC GTGGCGGCGG GCCGGATCTC CCAGACCTCG
ACCGATGCCA TCAACGGCTC GCAGCTCTAC GCCACCAACC AGGCGGTGCA GGCGATCGCG
GCCAGCACGC CGACCCACTA CTACAGCGTG AACGACGGCG GCGTGCAGCA GGGGAACTAC
ACCAACAACG GCGCAACTGG CGCCAATGCG CTGGCGGCTG GCGTGGGCAC CCTGGCGGCG
GGCACGCAAG CCACGGCCGT GGGCCCGTTG GCAAGCGCCT CCGGAAAGTC CTCGATTGCG
CTGGGCCTCC AATCCGATTC GAGCAATGTC AGCACCATCG CGGTCGGCAA CCGGTCCAAC
GCCTCAGGCT CCAACGCCAC CGCGATCGGA TCGGTGTCCA ATGCCTCCGG CGACAACGCC
ATTGCATTCG GATCGAGCAC CATTGCGTCG GCCGCGAATG CCACTGCCGT GGGCAACCGG
GCCAATGCGA GCGCTGCCAA TGCGCTCGCG CTCGGCGTTG GCGCCACGGC CGCCCAGGCC
GACGACGTGG CACTGGGCTC GGGCTCGGTG ACGGCCGCGG CCGTCGGCAC GGCCAGCACC
GTGATCAACG GCACGACCTA CAACTTCCAG GGCACCACGC CGACTTCGAC GGTGAGTGTC
GGCGCTCCGG GCGCCGAGCG CACCATCACC AACGTGGCGG CCGGGCGGAT CTCCGGCACC
TCGACCGACG CCATCAACGG CAGCCAACTG TTCGCCACCA ACTCGGCGAT CGATGCCGTG
GGCGTCACCG CCGGCAAGGG CTGGAACGTG ACCACGGGCC AGACCGGCAC CGGCACTGCG
ACGGGCACCA GCCTGCAGAA CATCGCGCCG GGCGGCACCG CCACCTACAC GGCGGGCAAC
AACATCGCCA TCACGCAGAA CGGCGCGGAG GTGCAGATCG CCACCAGCGC CACGCCCAGC
TTCACCAGCG TGACCACGGG CGGCACGGTG CTGAACAACA ACGGCCTCAC GATCGCGGGC
GGCCCGAGCG TGACGATCAA CGGCATCAAC GCCAACAACA CGGTCATCAC CAACGTGGCG
CCCGGCGTGG CGCCCACCGA TGCGGTGAAC GTGGACCAGC TGACCGACAC GGTCGCGGCC
AGCAAGACCA AGTACTACAG CGTGAACGAC AACGGCGTGG CCGGAGGCAA CGTCAACAAC
GACGGCGCAC AAGGCATCAA CTCCATTGCC GCAGGCGTGG GCGCCAGCAC CACCACGGCA
GCGACGGGCA GCGTGGCCAT GGGCACCAAC GCCGCGGTCA GCACGGTCAA TGGCGTGGCG
CTGGGCTCCG GTGCATCAGC GGGCGCCAAT GCGGGCGACG TGGCGCTGGG CTCGGGCTCG
ACGACGAGCA AGGCGGTCGG CACGGCCAGC ACCGTGATCA ACGGCACGAC CTACAAGTTC
GAGGGCACGA CGCCGGCGAG CACCGTGAGC GTGGGCAGCG CGGGCAACGA GCGCACCATC
ACCAACGTGG CAGCCGGGCG GATCTCCCAG ACCTCGACCG ATGCCATCAA CGGCTCGCAG
CTGTTCGCCA CCAACGCCGC CATCGACGAC GTGGCCACGA CCGCCGGCAA GGGCTGGAAC
GTGACCACGG CGCAGACCGG CACCGGCACC GCCACGGGCA CCAGCGTGCA GAACATCGCG
CCCGGTGCCA CCGCCACCTA CACGGCGGGC AACAACATCG CCATCACGCA GAACGGCGCC
GAAGTGCAGA TCGCCACCAG CGCCACGCCC AGCTTCACCA GCGTGACCAC GGGCGGCACG
GTGCTGAACA ACAACGGCCT CACGATCGCG GGCGGCCCGA GCGTGACGAT CAACGGCATC
AACGCCGGCA ACACGGTCAT CACCAACGTG GCGCCCGGCG TGGCGCCCAC CGATGCGGTG
AACGTGAGCC AGCTGAACAC CCAGGTGGAA GGGGCCAAGA TCCGCTACTA CAGCGTGAAC
GACAACGGCA CCAAGCAGGG GAACTATGCG AACGACGGCG CCACGGGCAT CAATGCCCTG
GCGGCCGGCG TGAACGCCTC GGCGGCCGGT GCCAGCGGCG TGGCCATGGG CAACGGCTCG
CGCGCCAGCG CCGCGGACAC CGTGGCGATC GGCAGCGGCG CAACGGCCGA TTCGGCCGAG
GCCGTGGCCA TCGGCAAGGG CGCGACGGCC ACGGGCGGCA AGGCCATCTC GATCGGTTCA
GGCAACACGG CCTACGGCGA CGGCGCCGTG GTGATCGGCG ATCCGAGCTA TGCGAGCGGC
ACCGGCGCCT TCACCGGCGG CGCCAACAAC ATTGCCAACA GCGACGGCAC GGCCACGGCC
ACCGCGGCCA ACCAGGCCAA CGGTGCGGTC GCGATCGGCA ATGGCAACAA GGCGATCGGC
CAGGGATCGG TGGCACTGGG CAATGGCTCC ACCGCAGGTG CGGCCGGCAA GGCAGGCAGC
GTGGCCATCG GCAATGCCGC GACGGCGGCT GCCAGTGCGG GCGACGTGGC CCTGGGCTCG
GGCTCCGTGA CCGCTGCTGC GGTGGGCACG GCCAACGCCG TGATCAACGG CACGACCTAC
AACTTCCAGG GCACCACGCC CGCGAGCACC GTGAGCGTGG GCAGCGTGGG TGCCGAGCGC
ACCATCACCA ACGTGGCGGC CGGCCGGATC TCCGGCACCT CCACCGATGC GATCAACGGC
TCGCAGCTGT TTGCCACCAA CCAGTCGATC GAGGACCTGA GCACCACGGT CACCACCAAC
AAGACCAAGT ACTACAGCGT CAACTCGACC GGCGGCACCA ACGAAGACAA CCTGGGCGCT
ACCGGAGCCG ACGCCATCGC GTCGGGCAAG AACGCGGCGG CGGCCGGCAC CTCGGCCGTG
GCCATCGGCC TCGGCGCCAC GGCGTCGGAC GCCAACAGCG TGGCGCTGGG TTCGGGCTCC
ACCACGGCCG CGGCCGTCGG CACGGCCAGC GCGGTGATCG GCGGCACCAC CTACAACTTT
GCCGGCACCA CGCCGGGGAG CACGGTGAGC GTGGGCAGCG TGGGCGCCGA GCGCACCATC
ACCAACGTGG CGGCGGGCCG GCTTTCCAAC ACCTCGACCG ATGCCATCAA CGGTTCGCAG
CTCTTCGCCA CCAACCAGCA GGTGACGGCG AACACCACGC AGATCACCAA CCTGGGCAAC
ACGATCGGCG ACATCAACAA CGGCGGGGGC ATCAAGTATT TCCATGCCAC CTCGACGCTG
CCCGATTCGC AGGCACTGGG CACCGACTCG GTCGCCATCG GCCCGAATGC GGTCGCCAAC
AACGCGAACG ACGTGGCACT GGGCGGCGGC TCCACCACAT TGGCGGCGGT GGGCACGGCC
AGCACGGTGA TCAACGGCAC GACCTACAAC TTCGCCGGCA CCACACCGGG GAGCACGGTG
AGCGTGGGCA GCGTGGGCGC CGAGCGCACC ATCACCAACG TGGCGGCGGG CCGGATCTCG
GGTGGCTCGA CCGATGCCAT CAACGGCTCG CAGCTGTTCG CCACCAACCA GTCGATCGAG
AACCTCAGCA CCACGGTCAC GGCCAACAAG ATCAGGTACT ACAGCGTCAA CTCCACGGGC
GGGGGCAACG AGGACAACCT GGGCGCCACG GGTACCGACG CCATTGCGTC GGGCAAGGAT
GCGAGCGCAA CGGTCGCCGG CGCGGTGGCC ATCGGCTCGG GCGCCGTGTC CGACCGCTTC
GTGGCACCCT CCACCGGCAG CATCCCGGCG GGCAGCTCGC TGATCAGCTA CAACACCACC
GACCGCGCGC TGCTGGGCGC CCTGTCCCTG GGCAGCGCCA CCAGCTACCG CCAGATCACC
AACGTGGCCG ACGGCACGCA GGCGCAGGAC GCGGTCACGG TGCGGCAGCT CGCGGGCGCG
CTGACCTCCT TCGCGGTCAC GCCGACGCTG TACTTCCATG CCAACTCGAA CGCCGCGGAC
TCGCTGGCCA TCGGCGCCGA GTCGGTGGCG GTGGGCCCGC AGACGGTGGT CAACGGCAAC
AACGGCATCG GCATCGGCAA CGGCGCGGTG GTGCAGCAGA CCGCGCCGGG CGGCGTGGCG
ATCGGCCAGG GCGCGACCTC GCACATGGCC GACTCCATTG CGCTGGGCAC GCAGTCTTCG
GCCGCGGCCG TGCAGGGCGT GGCGCTGGGC GCGGGCAGCA GCGTGACGCA GGCCGGCGGC
GTGGCACTGG GCGCGGGCTC GGTGGCCTCC ACCGCCGCGG GCGTGGCCGG CTACGTGCCG
CCCACGGCCA CCGAGGCACA GCGCATCGCC ATTGGCGCCA CCACCAGCAC GCTGGCGGCG
GTGTCGGTGG GCGATGCGGC CAACGGCCAG TTCCGCCAGA TCACCGGCGT GGCCGCGGGC
TCGGCCGACA GCGATGCGGT CAACGTCTCG CAGCTGCGCG GCGTGCAGGG CCAGGTGGCG
GTGATCGACC AGTCGACCGT CAAGTACGAC ACCAACCCCG ACGGCTCCAT CAACTACAAC
AGCGTGTCGA TGGGCGGCAG CAACGCGACC GGGCCGGTCA CGGTGCACAA CGTGGCGCCC
GGCGTCGCGG GCACCGATGC GGTCAACGTG AACCAGCTCA ACAGCGGCAT CGCGGGGGCC
AACGCCTACA CCGACGCGCG CGTCAACGCC CTGGGCGGCG AGATCCGCAG CATTGCCAAG
GATGCGAGCG CAGGCGCGGC CGGCGCAATG GCCATGGCCA CCATGCCGCA GGCCTACATC
CCGGGCAAGA GCATGGTGTC CGCGGGCGTG GCGGGTTTCG ACGGCCAGGC CGCCCTTGCC
ATCGGCGTGT CGAAGCTCTC GGACAACGGC CGGTGGGTCG TGAAGTTCAG CGGCTCGGCC
AACACGCGCG GCAAGGTCGG CGTGGCGGCC GGTGCGGGCT TCCACTGGTA G
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| Protein sequence | MNKSYRSIWN EALGAWVAAS ETTRARGKRG GSRVAIAAAA SVLGLLSISA QAQSVNCNVS
PWNAYSGTAS CMGLNSSAAG IGATALGSLA AADVLGALSV GYAAHTTGQN AIGLGFGAYA
TSINSIYLGA RTAAGTGALA AGAIGIGTDV TASAGNVIAI GTLAQSSALN AAAIGIRANA
AGQAAVAMGQ DANAQSANSV AIGLQATTSG STGAVAIGAR SSTSGINATS IGVVANATNT
DALAVGTNSA ATGLRSIAVG AEASASMQDA VAQGTQASAS AVNATAIGHL ATASDDAATA
VGNSARALGN SSLALGAQAV AVGTSTVAVG QGAGAGSTVA NTGSTAVGIA AGTLVSGAQN
TAMGGGIASV MRGAGSGVTG TRNVAFGSGD GTVAYDANLD ASAGSLVSGN DNIAIGTNAG
IGVAGNGTTS IGLSANASAN NAIALGSLAK ASAANTLAQG TLATAGGINA IAIGTQAIAS
AVNSINLGAR TAAGAGALAE SAIAIGTDVT ASQDRAVAMG IGSRATGLDA LAAGTRANAA
ADNATALGSG GTTAATAVRA TGVGSLAIGG NATLGAFASG ANAIAIGGES VADAADAVAI
GRASRATGGR AVAIGSGNVA SGNGAVAIGD PNTATGNGAI ASGLDNTATG NGSVAMGNTN
MVGGGGQAVS TPGTAAQGAV GIGYQNTVVG QGSVAIGSTS SALAAGAVAF GDTAVANNAD
DVALGSGSTT SKAIGTASAV IGGTTYNFAG TTPLSTVSVG ALGAERTITN VAAGRISQTS
TDAINGSQLY ATNQAVQAIA ASTPTHYYSV NDGGVQQGNY TNNGATGANA LAAGVGTLAA
GTQATAVGPL ASASGKSSIA LGLQSDSSNV STIAVGNRSN ASGSNATAIG SVSNASGDNA
IAFGSSTIAS AANATAVGNR ANASAANALA LGVGATAAQA DDVALGSGSV TAAAVGTAST
VINGTTYNFQ GTTPTSTVSV GAPGAERTIT NVAAGRISGT STDAINGSQL FATNSAIDAV
GVTAGKGWNV TTGQTGTGTA TGTSLQNIAP GGTATYTAGN NIAITQNGAE VQIATSATPS
FTSVTTGGTV LNNNGLTIAG GPSVTINGIN ANNTVITNVA PGVAPTDAVN VDQLTDTVAA
SKTKYYSVND NGVAGGNVNN DGAQGINSIA AGVGASTTTA ATGSVAMGTN AAVSTVNGVA
LGSGASAGAN AGDVALGSGS TTSKAVGTAS TVINGTTYKF EGTTPASTVS VGSAGNERTI
TNVAAGRISQ TSTDAINGSQ LFATNAAIDD VATTAGKGWN VTTAQTGTGT ATGTSVQNIA
PGATATYTAG NNIAITQNGA EVQIATSATP SFTSVTTGGT VLNNNGLTIA GGPSVTINGI
NAGNTVITNV APGVAPTDAV NVSQLNTQVE GAKIRYYSVN DNGTKQGNYA NDGATGINAL
AAGVNASAAG ASGVAMGNGS RASAADTVAI GSGATADSAE AVAIGKGATA TGGKAISIGS
GNTAYGDGAV VIGDPSYASG TGAFTGGANN IANSDGTATA TAANQANGAV AIGNGNKAIG
QGSVALGNGS TAGAAGKAGS VAIGNAATAA ASAGDVALGS GSVTAAAVGT ANAVINGTTY
NFQGTTPAST VSVGSVGAER TITNVAAGRI SGTSTDAING SQLFATNQSI EDLSTTVTTN
KTKYYSVNST GGTNEDNLGA TGADAIASGK NAAAAGTSAV AIGLGATASD ANSVALGSGS
TTAAAVGTAS AVIGGTTYNF AGTTPGSTVS VGSVGAERTI TNVAAGRLSN TSTDAINGSQ
LFATNQQVTA NTTQITNLGN TIGDINNGGG IKYFHATSTL PDSQALGTDS VAIGPNAVAN
NANDVALGGG STTLAAVGTA STVINGTTYN FAGTTPGSTV SVGSVGAERT ITNVAAGRIS
GGSTDAINGS QLFATNQSIE NLSTTVTANK IRYYSVNSTG GGNEDNLGAT GTDAIASGKD
ASATVAGAVA IGSGAVSDRF VAPSTGSIPA GSSLISYNTT DRALLGALSL GSATSYRQIT
NVADGTQAQD AVTVRQLAGA LTSFAVTPTL YFHANSNAAD SLAIGAESVA VGPQTVVNGN
NGIGIGNGAV VQQTAPGGVA IGQGATSHMA DSIALGTQSS AAAVQGVALG AGSSVTQAGG
VALGAGSVAS TAAGVAGYVP PTATEAQRIA IGATTSTLAA VSVGDAANGQ FRQITGVAAG
SADSDAVNVS QLRGVQGQVA VIDQSTVKYD TNPDGSINYN SVSMGGSNAT GPVTVHNVAP
GVAGTDAVNV NQLNSGIAGA NAYTDARVNA LGGEIRSIAK DASAGAAGAM AMATMPQAYI
PGKSMVSAGV AGFDGQAALA IGVSKLSDNG RWVVKFSGSA NTRGKVGVAA GAGFHW
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