| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5538 |
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| Symbol | |
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| ID | 7975395 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 241414 |
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| End bp | 242604 |
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| Gene Length | 1191 bp |
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| Protein Length | 396 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644796123 |
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| Product | ABC transporter, periplasmic ligand binding protein |
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| Protein accession | YP_002947397 |
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| Protein GI | 239820212 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4134] ABC-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCCCAG TTTCCCTCTC ACGGCATCGC CGCGCCCTCA TTGCGGCCGT TCTCGGGACG
GCGAGCTGTG CCGGCATCGG CCTGGTCCAG GCGCAGGAGA TGCCAAAGTC GCCGGTGGTG
ATCAACGTGA TCGACGCCGC CGGCAACCTG GCGCTGACGC AGGGGGCGTT TGAGGCCTAC
CAGGCGCAGA ACCCCAAGCT GGTCTCCAAG TTCACTTTCA CCAAGGCGCC CGCGCCCGAG
ATCCCGGCCA AGATCAAGGC GATGCAGAAC GCGGGCCGCA GTGACATCGA CATGATCATT
GTCGGCACCG ATGCGCTCGC GGCCGGCCTC GAGATGAACC TGTGGGTCAA GTTGTTCCCC
GACTACGCGG CCAAGTTCCC CAAGCTGCAG GAGAACTACC TTCCCAACGC CTACAAGATG
CAAGCGCTGG CGAAGGACCA CGGCCTAGCC ATCGTCTTCA TGCCTGCCGG CCCGCTGGTC
GAGTTCAACC CCGACAAGGT CAAGACGCCG CCGACGACGC CCCAGGAACT GCTGGCCTGG
TGCAAGGCCA ATCCCAACAA GCTGATCTAT GCACGGCCCG CCAACTCCGG TCCGGGGCGC
ACCTTCTTGA TGGGGCTGCC CTATCTGCTG GGAGACAAGA ACCCTGCCGA CCCGATCAAT
GGTTGGGACA AGACCTGGGC CTACCTGAAG GACCTCGACG CCTGCATCGA GTACTACCCC
ACGGGAACCG CAGCCGTGAT GAAGGAACTG GGCGAAGGCT CGCGCGACAT GACGCTGACG
GTGACGGGTT GGGACATCAA CCCAAGGGCG CTGGGCATCG TGCCGAAGAA CTTCCAGGTG
CTGCCCTTCA AGGGCATGAC GTGGGTCAAC GATGCGCACT ACATCGTGAT TCCCAAGGGC
GTCCCGCCGG AGAAGCAAGC GGTGGTTCTC GACCTGATGG CTTTCCTGCT CAAGCCGCAG
CAGCAGGCGA TGACCTATGA CAAGGGCTAC TTCTATCCGG GCCCGGCGGT CAAGGACGTG
CCGCTGTCGC TGGCACCCAA GGACAGCCAG GACGTGATCA AGGAGTTCGG ACGGCCTGAC
TACGACAAGT GGCTGGCCCA GTTCCCTCAT GCCGTGCCGC TCGAGCCCAA GGCCATGGTC
GATGCGTTCC GCCGCTGGGA CCAGGACATC GGCACCCGCA AGACCAAGTG A
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| Protein sequence | MRPVSLSRHR RALIAAVLGT ASCAGIGLVQ AQEMPKSPVV INVIDAAGNL ALTQGAFEAY
QAQNPKLVSK FTFTKAPAPE IPAKIKAMQN AGRSDIDMII VGTDALAAGL EMNLWVKLFP
DYAAKFPKLQ ENYLPNAYKM QALAKDHGLA IVFMPAGPLV EFNPDKVKTP PTTPQELLAW
CKANPNKLIY ARPANSGPGR TFLMGLPYLL GDKNPADPIN GWDKTWAYLK DLDACIEYYP
TGTAAVMKEL GEGSRDMTLT VTGWDINPRA LGIVPKNFQV LPFKGMTWVN DAHYIVIPKG
VPPEKQAVVL DLMAFLLKPQ QQAMTYDKGY FYPGPAVKDV PLSLAPKDSQ DVIKEFGRPD
YDKWLAQFPH AVPLEPKAMV DAFRRWDQDI GTRKTK
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