| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5475 |
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| Symbol | |
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| ID | 7975169 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 176091 |
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| End bp | 177008 |
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| Gene Length | 918 bp |
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| Protein Length | 305 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644796062 |
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| Product | transcriptional regulator, AraC family |
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| Protein accession | YP_002947336 |
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| Protein GI | 239820151 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.59164 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGAATC CCCTTCGTTC CGACTGCCAA CTTGGACAAC GGTTGGCGTC GCAGTACGGC
ATCGACGCCG TGCAGTCACT CGTGAGCAGG TCGCGCCGCG GCTGCGAGCT GGGCGTCGCC
CGGATGCGCT ATGAGTTGCC GCATCTGTTC GTGCTCGCGC CTCTCCCGCT CGAGAACGCA
TTCCTGCTCA GCGTGGAGAT CAATCCGGGC GGCAGCCGGC GCATCGTCCG TGACGGCAAA
TCCCGGCAAC TGGGCCTGCA GCAGGAGGGC GCCTTTCACA TTGCCGATCT TTCGCAGCAC
GCCTCGGCCT ACGTGAGCAG CCCGTTCCAT TCGATGTTCT TCCACCTGCC GCGCGCAACC
ATCGATGCGT TCACCGAAGA AATGGAGATG CCGCGTGTCG ATCGGCTGGA CTGCGCCGCC
GGCACGCTGG ACCCGGTGGT CGCCCATCTG GGCCGGGCCA TGCTGCCGGT GCTGATGCAT
CCGCAGGATG CGAGCCGGCT GTTCGTGGAA CACCTGGCGC TGGCACTGAA GGCGCACGTG
GTGCATGCCT ACGGCGGCGC GGCCGGGCCG GCGCCCGTGC ACACCCGGGG CCTCGCGCCG
TGGCAAGAGC GCCGCGCCAA GGACTTTCTC ATGGCGCACC TCGCAGGGGA CGTATCGCTG
GGCGACGCGG CGCGCGAATG TGCGCTGTCG CGCAGCCACT TCAGCAAGGC GTTCAAGCAG
ACGACGGGGC AGACGCCGCA TGCATGGCTT GTAGCGCAGC GCGTGCAAGC GGCGCGTCGG
CTGCTGGGGC AGCCGCATCT TCCGATTGCC GAGATTGCCA CGGCCTGCGG TTTTTCCGAT
CAGAGCCACC TGACGCGGGT TTTCACCGCG CACACAGGCA CATCTCCGGC GCGGTGGCGG
CGCCTGAACG CGGGCTGA
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| Protein sequence | MLNPLRSDCQ LGQRLASQYG IDAVQSLVSR SRRGCELGVA RMRYELPHLF VLAPLPLENA
FLLSVEINPG GSRRIVRDGK SRQLGLQQEG AFHIADLSQH ASAYVSSPFH SMFFHLPRAT
IDAFTEEMEM PRVDRLDCAA GTLDPVVAHL GRAMLPVLMH PQDASRLFVE HLALALKAHV
VHAYGGAAGP APVHTRGLAP WQERRAKDFL MAHLAGDVSL GDAARECALS RSHFSKAFKQ
TTGQTPHAWL VAQRVQAARR LLGQPHLPIA EIATACGFSD QSHLTRVFTA HTGTSPARWR
RLNAG
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