Gene Vapar_5466 details

Gene Information

• Locus tag: Vapar_5466
• ID: 7975160
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012792
• Strand: -
• Start bp: 167726
• End bp: 168325
• Gene Length: 600 bp
• Protein Length: 199 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 644796053
• Product: helix-turn-helix-domain containing protein AraC type
• Protein accession: YP_002947327
• Protein GI: 239820142

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAAGGCG CCTACGGCGA TCTCCTGGGA CGGTACTTCG AGCTGCCCTG CGCGCCCGCC 
CTCGTCATGC TGCCCGCGCC GACGACGCCC TTCGTCGCCA CGCGCATCAC CTGCCTGCCC 
GACCAGCTGG GCATGAAGCA GGAGATCCCG CGGCAGGACG CCTTCGCCGT GACCCTGCAC 
CTTGCCGGTG TGAGCCACCA CGAGCTCTGG GTGCGGGGCC GGCCTTCGGT GGTGCGCGGC 
TATGCGCCCG GGGCGATCAG CATCGTCGAC CTGCGCGACG AGGTGGCGAG CTACCTGGGC 
AGTCCGCTGG ATGCCCTTCA CTTCTACGTG CCGCGCGCGC TGGTGGACGC CGTGACCGAT 
GCGGCGGGCC TGGCGCGCGT GAGCGGCATT GCCTGCATGC CGGGGCTGGT CGATCCCGTG 
ATCGAAAACC TGGGGGCGGC GGTGCTGGCC TTGCTCGAGC GGCGGCAGCG CGCAAGCTCG 
GCGACGAGCG AGCACCTGGC GATCGCGATC TGTGCGCACC TGGTCCATCG CTTCGGAAGC 
ACCGCCGGCG GCGATGCCGC CGCGTCCCGG GCGCCGCGGC ATTCGCGGTG CATGCACTGA 

 

Protein sequence

MQGAYGDLLG RYFELPCAPA LVMLPAPTTP FVATRITCLP DQLGMKQEIP RQDAFAVTLH 
LAGVSHHELW VRGRPSVVRG YAPGAISIVD LRDEVASYLG SPLDALHFYV PRALVDAVTD 
AAGLARVSGI ACMPGLVDPV IENLGAAVLA LLERRQRASS ATSEHLAIAI CAHLVHRFGS 
TAGGDAAASR APRHSRCMH