| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5448 |
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| Symbol | |
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| ID | 7975142 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 152024 |
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| End bp | 152713 |
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| Gene Length | 690 bp |
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| Protein Length | 229 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644796036 |
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| Product | two component transcriptional regulator, winged helix family |
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| Protein accession | YP_002947310 |
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| Protein GI | 239820125 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.270851 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAGAA GCATCCTGAT TGTCGAAGAC GATCCCCGTG TCGCCGATTT CCTGGTCCGC
GGGCTGAAGG CGGAAGGCTT TGCGGTGACG CATGCCCGCA CCGGTCCGCA GGGGCTGGAG
CTGGCGCGCC GCGGAGACCT CGCGCTTTTG ATCCTCGATC TGATGCTGCC GGGCATCAAC
GGCCTGGAGC TGTGCCAGAC CTTCCGCGCC GAGGGCGGCC AGACGCCGGT GCTGATGCTG
ACCGCCATGA GCACGACCGA AGACAAGGTG AACGGCCTGC GCCTCGGCGC CGACGACTAC
CTGACCAAGC CCTTCGACTT CGAGGAACTG CTCGCGCGCA TCGAGGCGCT GCTGCGCCGC
GGCCGGGACC TCAGGCTGCG GGTCACGACC TTGCGGGTGG CCAACCTGGT GCTGGACCGC
GAACGCATGC GCGTGGAGCG CGCGGGGCAG CCGATCACGC TGACGGCCAA GGAACTGGCA
TTTCTCGAGC TGCTCATGAG CGCACCCGGG CGGGTGTACA GCCGCGAACG CATCCTGGCC
ACTGTCTGGG GCACGCACGA GGATCCGCTC ACCAATATCG TGGATGTCTA CGTGCGGCGA
CTTCGCATGA AGATCGACGG CGACCACGCG GTGCAGCTGC TGCAGACCGT GCGCGGCCTC
GGATACCGCA TCAGCGAGAC GGCGGGCTAG
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| Protein sequence | MNRSILIVED DPRVADFLVR GLKAEGFAVT HARTGPQGLE LARRGDLALL ILDLMLPGIN
GLELCQTFRA EGGQTPVLML TAMSTTEDKV NGLRLGADDY LTKPFDFEEL LARIEALLRR
GRDLRLRVTT LRVANLVLDR ERMRVERAGQ PITLTAKELA FLELLMSAPG RVYSRERILA
TVWGTHEDPL TNIVDVYVRR LRMKIDGDHA VQLLQTVRGL GYRISETAG
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