Gene Vapar_5447 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5447 
Symbol 
ID7975141 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand- 
Start bp151415 
End bp151846 
Gene Length432 bp 
Protein Length143 aa 
Translation table11 
GC content62% 
IMG OID644796035 
ProductCalcium/calmodulin dependent protein kinase II association-domain protein 
Protein accessionYP_002947309 
Protein GI239820124 
COG category[S] Function unknown 
COG ID[COG4875] Uncharacterized protein conserved in bacteria with a cystatin-like fold 
TIGRFAM ID[TIGR02246] conserved hypothetical protein 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.218573 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAACCT CCGTGTTGGC ACAGACGGCC GCGAGCGCAA GTTGTGTTCC CGCCAGCGAA 
CGCCAGATCG AGGCACTGTT CGATCGCTGG AATGCCTCCC TCGCCACGCA GGATCCCGAC 
AAGGTGGTGG CCAACTACGC TCCTGACGGC GTGCTGCTGG CCACGGTGTC GAACCAGCCG 
CGCACCAGTC CGGCCGAAAT CCGCGACTAC TTCGTCAAGT TCCTCAAGGG GGCGCCGCAA 
GGCAAGATCG ATTCGCGCAC GATCCGGGTC GGCTGCAATG TCGCGCAGGA CATCGGTACC 
TACACCTTCA AGTTCAAGGA CGGCAAGGCG GTGCACGCCC GCTACACCTA TGTGTACGAA 
TGGCTCAACG GCCAGTGGCT GATTGCGCAC CATCACTCGT CGGCAATGCC CGAGAGCATT 
GCGGCGAAGT AA
 
Protein sequence
MSTSVLAQTA ASASCVPASE RQIEALFDRW NASLATQDPD KVVANYAPDG VLLATVSNQP 
RTSPAEIRDY FVKFLKGAPQ GKIDSRTIRV GCNVAQDIGT YTFKFKDGKA VHARYTYVYE 
WLNGQWLIAH HHSSAMPESI AAK