| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5440 |
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| Symbol | |
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| ID | 7975134 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 142848 |
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| End bp | 143735 |
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| Gene Length | 888 bp |
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| Protein Length | 295 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644796028 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_002947302 |
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| Protein GI | 239820117 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGTTC TCGACCAGGC GCCCGGATTG GTGGCCTTTG CCAGCGCCGT GGAGGCCGGC
TCGTTCAGTG CGGCCGCGCG GACGCTGGGG ACGTCGCCCT CGGCGGTCTC CAAGAGTGTG
GCGCGGCTGG AGCAACGCTT CGGCGTGCGG CTCTTCCAGC GCTCCACGCG GGTGCTGTCG
CTCACGCAGG AGGGCGCCGC GTACTACGAG CGCATTGCGC CGCTGCTGCG CGCGCTCGAC
CAGGCCGGCG ACGCGATGCG GCCCGCCGGC ATTGCGCAGG GCGTGCTGCG CATCACGGCG
CCCGGAGACC TCGGGCGCAT CCTGCTGGAG CCGGTGATCG GCAGGTTCCT GCCCAGGCAC
CCGGAACTGA AGCTCGAGAT GAGCCTTGCC GATCGCCATG TCGACCTGAT CCGCGAGGGC
TACGACATCG CCATTCGCGC GGGGCAGGTG GCCGACTCCG ACCTCACGGC GCGGCGCCTC
GCCGACCTGC CGCTCGTGCT GGTGGCGTCG CCCGTGTATC TGGCGCGCCG CGGCACGCCC
GATTCGATCG AGGCCCTGCA CAGCCACGCG CACGTGCGCT ACATGCTGGG CGGCAAGGCG
TTTCCGATCC GCTTTGCCGA TGGCAGCGTG TTGAACCCGG CCGGCGTGTT CGACACGGAC
AACAGCGTCG CGCTGCGCAT CGCGGCGCTC GGCGACCTGG GCATCGTGCA GATCCTGCGC
CTGTTCGTGC AGGACGACAT CGACGCCGGC CGGCTGGTGC CCGTGCTGCC ATCGCAGCCG
TTGCCGCTCG TGACCGTCTC GGCCCTGCAT GCCTTCGGGC GCCAGGCGCC GGCGCGTGCG
CGGCTTTTCA TCGAGTTCCT TGCGGCGGAA CTCGAAGGGT CGTCCTGA
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| Protein sequence | MNVLDQAPGL VAFASAVEAG SFSAAARTLG TSPSAVSKSV ARLEQRFGVR LFQRSTRVLS
LTQEGAAYYE RIAPLLRALD QAGDAMRPAG IAQGVLRITA PGDLGRILLE PVIGRFLPRH
PELKLEMSLA DRHVDLIREG YDIAIRAGQV ADSDLTARRL ADLPLVLVAS PVYLARRGTP
DSIEALHSHA HVRYMLGGKA FPIRFADGSV LNPAGVFDTD NSVALRIAAL GDLGIVQILR
LFVQDDIDAG RLVPVLPSQP LPLVTVSALH AFGRQAPARA RLFIEFLAAE LEGSS
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