Gene Vapar_5417 details

Gene Information

• Locus tag: Vapar_5417
• ID: 7975111
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012792
• Strand: +
• Start bp: 123493
• End bp: 124173
• Gene Length: 681 bp
• Protein Length: 226 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 644796005
• Product: nitroreductase
• Protein accession: YP_002947279
• Protein GI: 239820094
• COG category: [C] Energy production and conversion
• COG ID: [COG0778] Nitroreductase

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATGCGG CACCTTTCAT CGATAACCTC ATCCGGGATC GACGCAGCAA GCGCGGCTTT 
CTCGATCGCC CCGTTCCCAT CGACACGGTG AAAGACATCC TGTCGACCGC GAGCCATGCG 
CCCAGCTCGA GCAACACGCA GCCCTGGCGC TGCTATGTGG TGACCGGCGA AACGCGCGAC 
CGCGTCACCC GGGCTGCCGT GGCGGAGTTC CGCGCCAACC ATGCCACGCT GGCGCCGGAA 
TACCCCTTCT TTCCCCAGCC GCTGCACGAA CCGTACGGCA CGCGCTTCAA CACCTTCCGC 
GGCCAGCTCG GCGATGCGCA AGGCGTGCAC CGCAGCGACA AGGCCGGCCG CCTGCGCGAC 
GTGGAGCGCC AGTTCCTGTT CTTCGATGCG CCGGTCGGGA TCATCTTCAC GATGGACCGC 
CGCCTCGAAT GGGCCAGCTT TCTCTACTAC GGCTGCTTCC TGCAGAACGT CATGCTGGCC 
GCCAAGGGCC GCGGCCTGGA CACCTGCCCG CAGCAGATCT GGTCGCTGCA GCACCACGTG 
CTGCGCGCGG AACTCGGCAT TCCCCAGGAC GAGATGGTGA TTGCCGGCAT GTCGATGGGC 
TGGGCCAACA ACGGCATGCC GGAGAACCGC ATGGCCCTGG AGAAAACGCC GGTCGAGCAA 
TTCGCGTCGT TCGCCCAATA A 

 

Protein sequence

MNAAPFIDNL IRDRRSKRGF LDRPVPIDTV KDILSTASHA PSSSNTQPWR CYVVTGETRD 
RVTRAAVAEF RANHATLAPE YPFFPQPLHE PYGTRFNTFR GQLGDAQGVH RSDKAGRLRD 
VERQFLFFDA PVGIIFTMDR RLEWASFLYY GCFLQNVMLA AKGRGLDTCP QQIWSLQHHV 
LRAELGIPQD EMVIAGMSMG WANNGMPENR MALEKTPVEQ FASFAQ