| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5409 |
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| Symbol | |
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| ID | 7975103 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 115234 |
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| End bp | 116277 |
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| Gene Length | 1044 bp |
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| Protein Length | 347 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644795997 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_002947271 |
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| Protein GI | 239820086 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.199216 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAACCT CTGCCCTCCC TTCGCCCTCT TCCATCCCCC CCGCGCCACG CGCGGATCCG
CTGGCCTCCA GCTTCGCCAC CAGCTATGCC GGGGTGGTCG CCTTCATCGC CGTCGTCACG
GAAGGCAGCT TCGCACGGGC CGCCGACCGG CTGGGCATCG GTCGCTCGGC CGTGAGCCGC
AGCGTCCAGA AGCTGGAAGA CCAGCTGAAC GTCCGGCTCT TCCTGCGCAC CACGCGAAGC
ACCACGCTCA CGCGCGAAGG CGACCTCTTC TACGCCAATT GCCACACCGG GGTCGACCGG
ATCGTCCAGG CCGTGGAAGA AATGCGTGAC CTGCGGCAAG GCCCGCCCCG CGGGCATCTG
CGCATCAACG CCGCAGTCGG GTTCGGCCGC CGGGTCGTCG CGCCCCTGCT GGGCGAATTT
CGCGCGACCT ACCCAGAGGT CACCATCGAC CTGTTGCTGA ACGACAAGCC GACCGACTTC
ACCTCCGACC GTGTCGACAT CGCGTTTCGC AACGGCCGCA TGGAAGACGC CCAGATCATC
GCCAAGCAGA TCATCCCGAT GCAGCTGCTG CTGTGCGCCT CCCCCGCCTA CCAAGTGGCC
CACGGACTGC CCGACAGCAT GGAAGCCCTG GCCCAGCACG AGTGCATCAA CTTCCGCTTT
TCATCCGGTC GCATCTTCGA GTGGGAGTTC AAGGTCGGGG GCCATCCACG CAAGCTCGTG
CCACAGGCCA AGCTCACCTA CAACGACGCG GACCTGGTGC TGCAGGCCGT GCTCGACGGC
CACGGCATCG CCCAGCTGCC GGGCTACCTA GCCTGCGAGG CGCTGAGAAT GGGTGCGCTG
GTCCCGTGCC TGACACAGTA CGCACCCGAC GACAGCGGTC ACTACATCTG CTACCTGAGC
CGGCAGCACC TGCCTTCGCG CATGCGCGTG TTCATCGACT TCATGACCTC GAAGATCCGG
GCCGCCGACC TGGACTGCCT CACCGACCTC AGCCCGAAGC TGCACGCCGA CGCCGGGATT
GGTGCCGAGG CGACAACAGC GTGA
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| Protein sequence | MTTSALPSPS SIPPAPRADP LASSFATSYA GVVAFIAVVT EGSFARAADR LGIGRSAVSR
SVQKLEDQLN VRLFLRTTRS TTLTREGDLF YANCHTGVDR IVQAVEEMRD LRQGPPRGHL
RINAAVGFGR RVVAPLLGEF RATYPEVTID LLLNDKPTDF TSDRVDIAFR NGRMEDAQII
AKQIIPMQLL LCASPAYQVA HGLPDSMEAL AQHECINFRF SSGRIFEWEF KVGGHPRKLV
PQAKLTYNDA DLVLQAVLDG HGIAQLPGYL ACEALRMGAL VPCLTQYAPD DSGHYICYLS
RQHLPSRMRV FIDFMTSKIR AADLDCLTDL SPKLHADAGI GAEATTA
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