Gene Vapar_5384 details

Gene Information

• Locus tag: Vapar_5384
• ID: 7975845
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012792
• Strand: +
• Start bp: 90153
• End bp: 90752
• Gene Length: 600 bp
• Protein Length: 199 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 644795978
• Product: isochorismatase hydrolase
• Protein accession: YP_002947252
• Protein GI: 239820067
• COG category: [Q] Secondary metabolites biosynthesis, transport and catabolism
• COG ID: [COG1335] Amidases related to nicotinamidase

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAAGGCCG CGCTGCTGGC CATGCACTAC CAGAACGACG TGCTGCACGT CGACGGCAAG 
GTGCGCGTGG GCGTGGCCGC CGACGACCCC GCGCGCCCGC GCCTCATCGC CTCGGCCGCA 
CGGCTGATCG CCGCTGCGCG CGCGAACGGC GTGCCGGTGA TCTTCGTGCG CATCGCCTTC 
GCGCCCGACT ACTCGGATTG CCTGCGCAAC TGCGCGCTGT TCCGGCGCGT GGCCGAGAGC 
GGCGCGGTGC AGGAAGGCAG CTGGGGCGCC GGGTTCTACG GCGAACTCGC GCCGCTGCCG 
GGCGAAGCCG TCGTCACCCA CAAGCGCAAC AACCCCTTCT GGGCCAGCGG GCTCGAGGAG 
GCGGTGCGCG CCACCGGTGC CAGCCGCTTG TACCTGGCCG GCATCGCCAC CAACCATGTG 
GTGGAGCACG GCGCGCGCCA TGCGAGCGAC CTGGGCTACC ACGTGGCGGT GGTCGCCGAC 
GCCTGCAGCA CCGCGCAGGC GCACCTGCAG GCCGCCAGCC TCGAAACCCT GTCGATGCTC 
GCGGACGTGG TCCGCGTGGA CGATGCCGTG GCACAGATGG AAAGGGGAGG CCGGCCATGA 

 

Protein sequence

MKAALLAMHY QNDVLHVDGK VRVGVAADDP ARPRLIASAA RLIAAARANG VPVIFVRIAF 
APDYSDCLRN CALFRRVAES GAVQEGSWGA GFYGELAPLP GEAVVTHKRN NPFWASGLEE 
AVRATGASRL YLAGIATNHV VEHGARHASD LGYHVAVVAD ACSTAQAHLQ AASLETLSML 
ADVVRVDDAV AQMERGGRP