Gene Vapar_5371 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5371 
Symbol 
ID7975832 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand- 
Start bp77724 
End bp78425 
Gene Length702 bp 
Protein Length233 aa 
Translation table11 
GC content71% 
IMG OID644795965 
Productmalonate decarboxylase, gamma subunit 
Protein accessionYP_002947239 
Protein GI239820054 
COG category 
COG ID 
TIGRFAM ID[TIGR03134] malonate decarboxylase, gamma subunit 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.0278339 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAATGGA ATTCCCTGGT CACCCAGCTC TTCGGCTCCT TCCACGGCCT GCGTGCGGAT 
GGCGATTTTC TGCAGGGCGA AGTGATCTTC GAACGCGAGC CGCTCACGGT GATCGGCACC 
ACGAACCACG CGCCGATCGG CGTGCGGCTC GCGCTGGCGC AGGCGCGCGC GGTGCTCGAC 
ACCGTCAGGC AGCATCCGGG CCGTCCGATC CTGCTGTTGA TCGACACGCA GGGCCAGCAG 
CTGCGCCGGC GCGACGAACT GCTCGGCATC AATCGCGCGA TGGCGCACCT GGGCGCGAGC 
ATCGACCTGG CGCGGCGCCG CGGCCACCGC GTGATCGGCC TGGTGTACGA CCAGGCGCTG 
TCGGGCGGCT TCATCACCTC GGGGCTGATC GCCGACGCCT GCTACGCGCT GCCGGAGGCC 
GAGATCCGTG TGATGCGCAT TCCCGCGATG GCGCGCGTGA CCAAGCTGCC GGAGGACCGG 
CTCACCGAGC TGTCGAAATC CAACCCGGTG TTCGCGCCCG GCGTGCAGAA CTACGTGGCG 
ATGGGCGGCG TGCGTGCGCT GTGGACCGGC GACCTGCAAA CCCGCCTGCG CGATGCGCTG 
GCCCACACGC CGACCGAAGA CAGGCGCGCG CGCGACGGCG CCGAACGCGG TGGGCGCCGG 
CTCGCCGCCG CGGTCGTGCA GCGCGTGCTG GACGCCGCCT GA
 
Protein sequence
MQWNSLVTQL FGSFHGLRAD GDFLQGEVIF EREPLTVIGT TNHAPIGVRL ALAQARAVLD 
TVRQHPGRPI LLLIDTQGQQ LRRRDELLGI NRAMAHLGAS IDLARRRGHR VIGLVYDQAL 
SGGFITSGLI ADACYALPEA EIRVMRIPAM ARVTKLPEDR LTELSKSNPV FAPGVQNYVA 
MGGVRALWTG DLQTRLRDAL AHTPTEDRRA RDGAERGGRR LAAAVVQRVL DAA