Gene Vapar_5367 details

Gene Information

• Locus tag: Vapar_5367
• ID: 7975828
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012792
• Strand: -
• Start bp: 73233
• End bp: 75200
• Gene Length: 1968 bp
• Protein Length: 655 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 644795961
• Product: acetate/CoA ligase
• Protein accession: YP_002947235
• Protein GI: 239820050
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
• TIGRFAM ID: [TIGR02188] acetate--CoA ligase

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.657438
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGCAGCA ACGAAGCAGC AAGCCCTCTC ATTCCAGCCC CGGACATGAA GGACGCCCAT 
GTGTACGGCA TGGGCGCCTA TGAAAAACTG GTGGCCGAGG CAGAGGCCGA CCACAGCGGC 
TACTGGTCGC GCCTCGCGCG CGAGTTCCTG GGCTGGAAAA CGCCGTTCAC CCGGGGGCTC 
GACGACAGCC AGGCGCCCTT CTTCAAGTGG TTCGAGGACG GCACGCTGAA CGTGTCCTGG 
AACTGCCTCG ACCGCCAGGT CGAGCGCGGC CTGGGCGACA AGACCGCGAT CATCTTCGAG 
GCCGACGACG GACAGGTCAC GCGGACCAGC TACCGCGAGC TGCTCGCGCG CACCTGCCGC 
ATGGCCAATG CACTGAAGGC GCGCGGCGTG AAAAAGGGCG ACCGCGTCGT CATCTACATG 
TCGATGAGCA TCGAAGGCGT GGTCGCGATG CAGGCCTGCG CGCGCATCGG CGCCACGCAT 
TCGGTGGTGT TCGGCGGCTT CTCGGCGCAG AGCCTGCGCG ACCGCATCCA GGATGCCGGC 
GCCGTGATGG TCGTCACCGC CGACGAACAG GTGCGCGGCG GCAAGCCGCT GCCGCTCAAG 
GCCATCGTCG ACGAAGCCAT CGCGCTGGGC GGCTGCGAGA GCGTGAAGAA TGTCGTCGTC 
TACCGCCGCA CCGGCGGGCC GATCGGCTGG GTGCCCTCGC GCGACCGCTG GCTGCATGAA 
GAGACGCAAG GCCAGCCCGA GACCTGCGAG CCCGAATGGG TGGGCGCCGA GCATCCGCTG 
TTCGTGCTCT ACACCTCCGG CTCGACCGGC AAGCCCAAGG GCGTGCAGCA TTCCAGCGGC 
GGCTACCTGC TGCATGCGGC GCTGACGACC CAGTGGACCT TCGACCTGAA GCCCGCCGAC 
GTGTTCTGGT GCACCGCCGA TATCGGCTGG GTCACGGGCC ATACCTACAT CGCCTACGGT 
CCGCTCGCGC TGGGCGCCAC CGAAGTGGTG TTCGAGGGCG TCCCCACCTA CCCCGACGCG 
GGCCGCTTCT GGAAGATGAT CCAGGACCAC AAGGTGAGCG TGTTCTACAC CGCGCCCACG 
GCCATCCGCT CGCTGATCAA GGCGGCCGAA GGCAACGAAG CCGTGCACCC CCGGCGCTAC 
GACCTGTCGA GCCTGCGCAT CCTGGGCTCG GTCGGCGAGC CGATCAATCC GGCGGCCTGG 
GAGTGGTTCC ACCAGCACGT CGGCGGCGGC CGCTGTCCGA TCGTCGACAC TTTCTGGCAG 
ACGGAGACCG GCGGCCACAT GATCACGCCA CTGCCTGGCG CCACGCCGCT GGTGCCGGGT 
TCCTGCACCC TGCCCTTCCC CGGCATCGCG GCGGCCATCG TCGACGAGAC CGGCGCCGAC 
GTGCCAAACG GCCAAGGCGG CATCCTCGTG GTGAAGAAGC CCTGGCCGAG CATGATCCGC 
ACCATCTGGG GCGACCCGGA GCGCTTCAAG GCCAGCTACT ACCCGCCGGA ACTCAAGGGC 
TTCTACCTCG CGGGCGACGG CGCCATCCGC GATGCGAAGA CCGGCTATTT CACGATCACC 
GGCCGCATCG ACGACGTGCT CAATGTCTCG GGCCACCGCA TGGGCACGAT GGAGATCGAA 
TCGGCGCTGG TGTCGTGCAC CGCGCTCGTG GCCGAAGCCG CGGTGGTCGG CCGTCCCGAC 
GACACCACCG GCGAGGCGAT CTGCGCCTTC GTCGTGCTCA AGCGCGCGCG CCCCACGGGA 
GACGAAGCGA AGAAGATCGC GAACGAGCTG CGCAACTGGG TCGCAAAAGA GATCGGTCCG 
ATCGCCAAGC CCAAGGACAT CCGCTTTGGC GACAACCTGC CCAAGACGCG CAGCGGCAAG 
ATCATGCGCC GCCTGCTGCG CTCGGTGGCC AAGGACGAGC CGATCACGCA GGACACGTCG 
ACGCTGGAGA ACCCGGCCAT CCTGGCGCAG CTGTCGGAGC GGAACTGA 

 

Protein sequence

MSSNEAASPL IPAPDMKDAH VYGMGAYEKL VAEAEADHSG YWSRLAREFL GWKTPFTRGL 
DDSQAPFFKW FEDGTLNVSW NCLDRQVERG LGDKTAIIFE ADDGQVTRTS YRELLARTCR 
MANALKARGV KKGDRVVIYM SMSIEGVVAM QACARIGATH SVVFGGFSAQ SLRDRIQDAG 
AVMVVTADEQ VRGGKPLPLK AIVDEAIALG GCESVKNVVV YRRTGGPIGW VPSRDRWLHE 
ETQGQPETCE PEWVGAEHPL FVLYTSGSTG KPKGVQHSSG GYLLHAALTT QWTFDLKPAD 
VFWCTADIGW VTGHTYIAYG PLALGATEVV FEGVPTYPDA GRFWKMIQDH KVSVFYTAPT 
AIRSLIKAAE GNEAVHPRRY DLSSLRILGS VGEPINPAAW EWFHQHVGGG RCPIVDTFWQ 
TETGGHMITP LPGATPLVPG SCTLPFPGIA AAIVDETGAD VPNGQGGILV VKKPWPSMIR 
TIWGDPERFK ASYYPPELKG FYLAGDGAIR DAKTGYFTIT GRIDDVLNVS GHRMGTMEIE 
SALVSCTALV AEAAVVGRPD DTTGEAICAF VVLKRARPTG DEAKKIANEL RNWVAKEIGP 
IAKPKDIRFG DNLPKTRSGK IMRRLLRSVA KDEPITQDTS TLENPAILAQ LSERN