| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5362 |
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| Symbol | |
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| ID | 7975823 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 66868 |
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| End bp | 67983 |
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| Gene Length | 1116 bp |
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| Protein Length | 371 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 644795956 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_002947230 |
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| Protein GI | 239820045 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0864007 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACACGC GCCGCTTCCT CACATCCGCC TTGGTCTGCG CCTTGCCGTT CGCGCTGGCC
GCCTGCGACG ACAAGGCCCC GCCCGATCCA CGCACCCAGA CGCCGCTGGT GCGGGCCGCC
ACGGTCCAGG CCGCCGGGCC GGCATCGCGC TCGTTCACCG GCACCGTCGC CGCGCGGGTC
CAGAGCGACC TGGGCTTTCG CGTCTCCGGA AAGGTGCTGG AGCGCCTGGT CGACGCGGGC
CAGGCGGTCA AGCGCGGGCA GCTGCTCATG CGCATCGACC CGGTCGACCT GAGGCTGGCG
GCGCGTGCGC AGCAGGAGGC CGTGAGCGCC GCACGGGCGC GCGCGAAGCA GGCCGGCGAC
GAGGAAGCGC GCTTTCGCGA CCTGCGCGGC ACCGGCGCGA TTTCCGCCTC GGCGTACGAC
CAGGCCAAGG CGGCGGCGGA TGCCGCGCAG GCCCAGCTCG CTGCGGCCGA GGCGCAATCG
GAAGTCGCGC GCAATTCGAA TCGCTATTCG GAGCTCGTTG CCGATGCGGA CGGCACGGTG
CTCGAGACGC TGGCCGAGCC TGGCCAGGTC GTCAGCGCCG GGCAGCCGGT GGTCCGCGTG
GCGCAGGCCG GGCGCAGGGA GGCCGTGGTG CAGTTGCCCG AAACGCTGCG TCCGGCCGTC
GGCTCCGGCG GGCAGGCCAC ACTGTTCGGC AAGGAAGACG TTGCCGTGCC CGTCAAGCTC
AGGCAGCTTT CCGACGCGGC CGACAGGCTC ACGCGCACCT TCGAGGCGCG CTACGTGCTC
GAAGGCGCGC TCGCCAACGC ACCGCTGGGC GCCACGGTGA CCGTCGACAT CTCGGACGGC
AAGCCGGCCC GGGCAGGAGG CGTGCAGGTG CCCATCAGCG CCTTGTTCGA TACCGGCAAG
GCGACGGGCG TCTGGGTCAT CGGCGGCGAT CCGTCGACGG TGCGCTGGCA GCCGGTGGCC
GTCGAGCGCC TGGATGGCGA GCGCGCGCTG GTGGCCGGGC AGCTCAAGCA GGGCGACCAG
GTGGTTGCGC TTGGCGCGCA CCTGCTGCGC GAAGGCGAGA AGGTGCGTGT CGCAGCCTCG
GCCGCGCCCG CCGCGGCGGG CGGAGCGCGA CCATGA
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| Protein sequence | MHTRRFLTSA LVCALPFALA ACDDKAPPDP RTQTPLVRAA TVQAAGPASR SFTGTVAARV
QSDLGFRVSG KVLERLVDAG QAVKRGQLLM RIDPVDLRLA ARAQQEAVSA ARARAKQAGD
EEARFRDLRG TGAISASAYD QAKAAADAAQ AQLAAAEAQS EVARNSNRYS ELVADADGTV
LETLAEPGQV VSAGQPVVRV AQAGRREAVV QLPETLRPAV GSGGQATLFG KEDVAVPVKL
RQLSDAADRL TRTFEARYVL EGALANAPLG ATVTVDISDG KPARAGGVQV PISALFDTGK
ATGVWVIGGD PSTVRWQPVA VERLDGERAL VAGQLKQGDQ VVALGAHLLR EGEKVRVAAS
AAPAAAGGAR P
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