Gene Vapar_5358 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5358 
Symbol 
ID7975819 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand
Start bp63473 
End bp64063 
Gene Length591 bp 
Protein Length196 aa 
Translation table11 
GC content68% 
IMG OID644795952 
Producttranscriptional regulator, TetR family 
Protein accessionYP_002947226 
Protein GI239820041 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.25838 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCTATC CGTCCACCCA CAAAGAGGAA ACCCGCAAGA AGCTGCTCGC GAATGCCCGC 
GCCATCGCCA AGAAGGGCGG CTTCGGCACC ACCGGCGTCG ATGAATTGAT GGCGAGCATC
GGCCTGACCG GGGGCGCCTT CTATGGCCAC TTTCCGTCCA AGGAGGCGTT GTTCGCCGAA
CTGCTCGAGC ACGAAATCTC CAACAGCACC GACATGCTGG CCGGAGACCG CGACTCGCCG
CCCGACCACG TCGCCAAGCG GCTGCGCAGC TACCTGAGCT CGTACCACGC GCTGCATCCG
GAAACCGGCT GCGTGCTGCC GGCACTGGGA CCCGAGATCG CCAGGGCCGG GCCCGAGGTG
CGTGCCTCGG TCGAAGAAGG CCTGAAGCGC CTGCAGAAAA GCTGGAGCTC GCGCATCGGC
GACCCCGACG CGGCATGGGC GCTGATTGCC CAGTGCGTGG GCGCGCTGGT GCTGTCCCGC
GCGGTCGAAT CCGAGCGCAC GCGCAAGGAA ATCCTGGCCT CCAGCCGGCG CTTCATCGAC
CAGACGCACG CGCTGGACGC GGCGCCCGCG AAGCCATCCA AGGCCTCCTG A
 
Protein sequence
MRYPSTHKEE TRKKLLANAR AIAKKGGFGT TGVDELMASI GLTGGAFYGH FPSKEALFAE 
LLEHEISNST DMLAGDRDSP PDHVAKRLRS YLSSYHALHP ETGCVLPALG PEIARAGPEV
RASVEEGLKR LQKSWSSRIG DPDAAWALIA QCVGALVLSR AVESERTRKE ILASSRRFID
QTHALDAAPA KPSKAS