Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5358 |
Symbol | |
ID | 7975819 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | + |
Start bp | 63473 |
End bp | 64063 |
Gene Length | 591 bp |
Protein Length | 196 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644795952 |
Product | transcriptional regulator, TetR family |
Protein accession | YP_002947226 |
Protein GI | 239820041 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.25838 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGCTATC CGTCCACCCA CAAAGAGGAA ACCCGCAAGA AGCTGCTCGC GAATGCCCGC GCCATCGCCA AGAAGGGCGG CTTCGGCACC ACCGGCGTCG ATGAATTGAT GGCGAGCATC GGCCTGACCG GGGGCGCCTT CTATGGCCAC TTTCCGTCCA AGGAGGCGTT GTTCGCCGAA CTGCTCGAGC ACGAAATCTC CAACAGCACC GACATGCTGG CCGGAGACCG CGACTCGCCG CCCGACCACG TCGCCAAGCG GCTGCGCAGC TACCTGAGCT CGTACCACGC GCTGCATCCG GAAACCGGCT GCGTGCTGCC GGCACTGGGA CCCGAGATCG CCAGGGCCGG GCCCGAGGTG CGTGCCTCGG TCGAAGAAGG CCTGAAGCGC CTGCAGAAAA GCTGGAGCTC GCGCATCGGC GACCCCGACG CGGCATGGGC GCTGATTGCC CAGTGCGTGG GCGCGCTGGT GCTGTCCCGC GCGGTCGAAT CCGAGCGCAC GCGCAAGGAA ATCCTGGCCT CCAGCCGGCG CTTCATCGAC CAGACGCACG CGCTGGACGC GGCGCCCGCG AAGCCATCCA AGGCCTCCTG A
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Protein sequence | MRYPSTHKEE TRKKLLANAR AIAKKGGFGT TGVDELMASI GLTGGAFYGH FPSKEALFAE LLEHEISNST DMLAGDRDSP PDHVAKRLRS YLSSYHALHP ETGCVLPALG PEIARAGPEV RASVEEGLKR LQKSWSSRIG DPDAAWALIA QCVGALVLSR AVESERTRKE ILASSRRFID QTHALDAAPA KPSKAS
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