| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5303 |
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| Symbol | |
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| ID | 7975707 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 3 |
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| End bp | 926 |
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| Gene Length | 924 bp |
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| Protein Length | 307 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644795897 |
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| Product | protein of unknown function DUF6 transmembrane |
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| Protein accession | YP_002947171 |
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| Protein GI | 239819986 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2962] Predicted permeases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.73277 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCACCCCG CGTTCGTAGC GACGCGCCGG CAATCGAAAC GGGAGAGCAC GGGGCAATGG
CTGCTGATCG CCGGCGGCGT GCTGCTCGGC ACGATCGGCG TCTTCGTGGA AGAGGCGCAC
CAGCATCCGC TGGTCACGGT GCTGTTTCGC TGCGCCTTCG GTGCATTGGC GCTGCTCGCA
TGGGGCTTGG CAACCGGCCG AACGAACGAG CTGCGGCTGC GCGGCAAGAG CGGATGGATC
GCTTGCGCGA CGGGCTGCCT GATGGTTGTG AACTGGGCGC TGTTCTTCGC GGCGATCCCG
CGCATCTCGA TTGCGGTGGC CACCATTGTT TTTCACATCC AGCCGGTGTG GATCATTCTC
TTCGGCGCAC TGGTCCTGCG TGAAGCCGTG TCGCCGCGCC AGTGGGCGGC CACCCTGGCC
GCGCTGTGCG GACTGGCGCT GACGACCGGG CTTTTCGGGG ACATGGCATC GGTGGCCTTA
TGGGGCAGCG GCTACGCGCT CGGCCTGCTC ATGTGCCTGG GCGGATCGCT GTGCTATGCC
GCGGTGACCA TCCTCGCCAA TACGGAAAAA ACCATCACGT CCTACGCGCT GGCCTGGTGG
CAGTGCCTGA TCGGCGCCGT GGTCCTGGCG TGGGTGCCGT TTGCGTTCGG CTGGCCGGAT
TCGGCGTCCG CCTGGGCGTG GCTCGCGGGA CTGGGCGTGC TGCACACCGG CCTGGCCTAT
GCCCTTCTCT TCGCGGGCAT GGCCCGGCTT TCGCTCGGCA GGATCGCCGT TCTGCAGTTC
GTGTACCCAT TGACCGCAGT GCTGGTGGAC TGGGGCGTGT ACGGGCGCCG CTTGAATGCG
GTCCAGCTTG CGGGTGTCGC GCTGATGGCG GCCGCACTGT GGACGATCAA GCAGCCGAAG
CGGGATGCGG CGGGCGGCGG CTGA
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| Protein sequence | MHPAFVATRR QSKRESTGQW LLIAGGVLLG TIGVFVEEAH QHPLVTVLFR CAFGALALLA
WGLATGRTNE LRLRGKSGWI ACATGCLMVV NWALFFAAIP RISIAVATIV FHIQPVWIIL
FGALVLREAV SPRQWAATLA ALCGLALTTG LFGDMASVAL WGSGYALGLL MCLGGSLCYA
AVTILANTEK TITSYALAWW QCLIGAVVLA WVPFAFGWPD SASAWAWLAG LGVLHTGLAY
ALLFAGMARL SLGRIAVLQF VYPLTAVLVD WGVYGRRLNA VQLAGVALMA AALWTIKQPK
RDAAGGG
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