Gene Vapar_5292 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5292 
Symbol 
ID7972725 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp5616091 
End bp5616726 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content67% 
IMG OID644795886 
Productprotein of unknown function DUF1239 
Protein accessionYP_002947160 
Protein GI239818250 
COG category[S] Function unknown 
COG ID[COG3117] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCGTG CCTGGAACCT GCTGCGCGAC GTGCTCGACC GCGCCACCAT CTACCTGCCC 
ATCATTCTCA CGGCGGCGGT TGCGCTCGGC ACCTACTGGC TGGTGCGCAA CGCGCCCAAG 
CTGCTCGCAC CCACCGCCAA GGCCGCGCCC ACGCACGAGC CCGACTATTT CATGCGCGGC 
TTCGTGATCA AGAACTTCCT GCCCAACGGC GACCTGCGCA GCGAACTCCA TGGCAAGGAA 
GGCCGGCACT ACCCCGACAC CGACACCGTC GAGGTCGACG ACGTGCGCAT GCGCTCCGTT 
TCGCCACAGG GCTACACCAC CCACGCGACG GCCAATCGCG GCATCTCGAA CTCCGACGGC 
AGCGAGATCC AGCTCTTCGG CAACGCCATC GTCATCCGCG ACCCGGTGGT GGGGCCCAGC 
GGCAAGTCCA CGCCGCGCCT GGAGTTCCGC GGCGATTTCC TGCACGCCTT CCTCGATACC 
GAACGCGTGA CCTCGAACAA GCCGGTCACG CTCATCCGCG GCAGCGACCA GTTCACCGCC 
GACCACCTCG ACTACGACAA CCTGAGCGGC GTCGCCAACC TGACCGGCCG GGTGCGCGGC 
GTACTGATTC CCTCGGCGGC CGGCAAGCCG CGCTGA
 
Protein sequence
MKRAWNLLRD VLDRATIYLP IILTAAVALG TYWLVRNAPK LLAPTAKAAP THEPDYFMRG 
FVIKNFLPNG DLRSELHGKE GRHYPDTDTV EVDDVRMRSV SPQGYTTHAT ANRGISNSDG 
SEIQLFGNAI VIRDPVVGPS GKSTPRLEFR GDFLHAFLDT ERVTSNKPVT LIRGSDQFTA 
DHLDYDNLSG VANLTGRVRG VLIPSAAGKP R