| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5285 |
|---|
| Symbol | |
|---|
| ID | 7972718 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 5610257 |
|---|
| End bp | 5611189 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644795879 |
|---|
| Product | Ion transport protein |
|---|
| Protein accession | YP_002947153 |
|---|
| Protein GI | 239818243 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGAT CGAACACCGC GCCCGCCGCC CGGAGCCTCG CGATCTCCTC GACCATCGAT
TCGCGCTTCG ACAAGCCTGC CAGCGGCTGG CGGCGCGGGC TGTTCACGGT GATCTTCGAG
GCCGACACGC GCGCGGGCCT GCTGTTCGAC CTGGCCTTGA TCGCGGTGAT CGTGGCCAGC
GTGCTGGTGG TGATCCTCGA CAGCGTGCAG TCGATCCGCG AGCAGTGGCG GCCCGTGTTC
AACGTGCTCG AATGGGTGTT CACCATTTTG TTCACGCTCG AGTACATCGC GCGGCTCGCC
TGCGTGAACA AGCCGCTGCG CTATGCGCTG AGCTTCTACG GCGTGATCGA CCTGCTCGCG
CTGCTGCCGA CCTTCCTGGT GGCGCTCGCG CCCGAGCTCG CCTACCTGAT CGACGTGCGC
ATTCTTCGGC TTTTGCGCGT GTTCCGCATC TTCAAGCTCT CGCGCTATTC GGTGGAATAC
CGCGCGCTGG TCTCGGCCGT GGCCGCGAGC CGCCGCAAGA TCACGGTGTT CGTGGGCTTC
GTGATGCTGG TGGTGCTGGT GATGGGCACG CTGATGTATG TGGTGGAAGG CCCGCAGCAC
GGCTTCACCA GCATTCCGGT GGCGATCTAC TGGGCCATCT CGACCATGGC CACCGTGGGC
TTCGGCGATC TCGTGCCCAA GACGGACCTC GGCCGCGCGA TTGCCTCGGT GATGATGCTG
CTGGGCTGGG GCGTGCTGGC CGTGCCGACC GGCATCGTGA CGGCCGAGAT GGCGCGGCGC
GGTCCCGACG ACGATACGCC AGTGCCCGTG GCGCTCGCGC CGCGCGGCGT GCTGGCGATG
GCGCCGCCCT CGGCCGTGGC CGCACCGGCG CGCCGGCTCA CGCCTGCGGC CAGACGGCGC
GCCCTTGCGC AGCATCGTCG AGGCGGGCGA TGA
|
|---|
| Protein sequence | MTRSNTAPAA RSLAISSTID SRFDKPASGW RRGLFTVIFE ADTRAGLLFD LALIAVIVAS
VLVVILDSVQ SIREQWRPVF NVLEWVFTIL FTLEYIARLA CVNKPLRYAL SFYGVIDLLA
LLPTFLVALA PELAYLIDVR ILRLLRVFRI FKLSRYSVEY RALVSAVAAS RRKITVFVGF
VMLVVLVMGT LMYVVEGPQH GFTSIPVAIY WAISTMATVG FGDLVPKTDL GRAIASVMML
LGWGVLAVPT GIVTAEMARR GPDDDTPVPV ALAPRGVLAM APPSAVAAPA RRLTPAARRR
ALAQHRRGGR
|
|---|
| |