| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5278 |
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| Symbol | |
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| ID | 7972711 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5603081 |
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| End bp | 5604445 |
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| Gene Length | 1365 bp |
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| Protein Length | 454 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644795872 |
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| Product | peptidase M20 |
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| Protein accession | YP_002947146 |
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| Protein GI | 239818236 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.86603 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTCGTT CGCCACGCGC CCTCCGGCTT GCCCCCCTCG CGCCCCTTGT GCTGGCCCTG
CTGTGCGCCG CGCCGGGCGC GCAGGCCCAG AACACCGCCG TCGCCCCCAC GCCGGCGCAG
GTCACTCCCG AGGTGGAAAA AACCTTTACG CAGCTGATGG CGGCGCCCGC GGTCCTGAAG
CTGCTCGACG CGGTCAAGGC CGACCACGAG CGTTCGGTCG AAGACCTGAA GATGCTGACC
GAGATCGAAG CGCCGCCGTT CAAGGAAAGC AAGCGCGCCG AGGCCTTCCT GGCGCGCATG
AAGGCGCTCG GGCTCGCCGA CGCAAAGATC GATGCCGAGG GCAACGTGGT CGGGCTGCGC
AAGGGCACCG GCAACGGCCC CAAGCTGCTG GTCTCGGCCC ACCTGGACAC CGTGTTCCCC
GCCGGCACCG ACGTGAAGGT GAAGGAGCAT GACGGCAAGC TCCACGCCCC CGGCATCGCG
GACGATACGC GCGGCCTGTC GGTGCTGCTG TCGTGGCTCA AGGTGCTCAA CGACAACAAG
GTCCAGACCG TGGGCGACCT GCTCTTCGTT GCCAATGTGG GCGAGGAAGA GCTCGGCAAC
CTGCGCGGCA TGAAGGCCAT CTTCCGCGAC CACCTCGACA TCGACGGCAT GGTGGGGCTG
GAGCCTTCGC CGGACGGCAA CGTGCTGGTG CTCGGCACGG CGAGCCACCG CTATGAAGTC
ACGTTCAAGG GCCCGGGCGG CCACAGCTTT GCCGCCTTCG GCCAGGTGCC CAGTGCGATC
CACGGCATGG GCCGCGCCAT TGCCAAGATC GCCGAAGTCC GCACGCCCAG CTTTCCCAAG
ACCACCTTCA CCGTCGGCAC CGTCGGCGGC GGCACCTCGG TGAACACCAT TGCGCCCGAT
GCCCGCATGG CCATCGACAT CCGCTCGGAC GACATGGCGT CGCTGCTGGA GACCGAAAAG
AAGATCCTCG CAGCCATCGA CGAAGCGGTG GCCGAGGAGA ACAAGCGCTG GAACGTGGCG
ACGCTGAGCG CCAGCAACAA GCTGATCGGC GACCGGCCGG GCGGGCGCAC GCCTTCAGAT
TCGGTGATCG TGGAAGCGGC TGTGCGCTCG AACACCGCCT TCGGCCACAA GACGCTGCTG
CGCGGCGGCA GCACCGACGC CAACGTGCCG ATGTCGTACG GCATCCCGGC CATCATCATC
GGCGGCGGCG GAAAGTCGAC CGGCTTCCAT GCCCTGAGCG AAGCGATCGA CGTGACAGAT
GCCTGGAAAG GCGCGCAGAA TTCGCTGGTG ACAGTGCTGG GTCTGGTCGG CGTGCAAGGG
GTAAGCCCCG CATTGCTGCC CAAACGCGCA CCGCGACCCA GGTAA
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| Protein sequence | MPRSPRALRL APLAPLVLAL LCAAPGAQAQ NTAVAPTPAQ VTPEVEKTFT QLMAAPAVLK
LLDAVKADHE RSVEDLKMLT EIEAPPFKES KRAEAFLARM KALGLADAKI DAEGNVVGLR
KGTGNGPKLL VSAHLDTVFP AGTDVKVKEH DGKLHAPGIA DDTRGLSVLL SWLKVLNDNK
VQTVGDLLFV ANVGEEELGN LRGMKAIFRD HLDIDGMVGL EPSPDGNVLV LGTASHRYEV
TFKGPGGHSF AAFGQVPSAI HGMGRAIAKI AEVRTPSFPK TTFTVGTVGG GTSVNTIAPD
ARMAIDIRSD DMASLLETEK KILAAIDEAV AEENKRWNVA TLSASNKLIG DRPGGRTPSD
SVIVEAAVRS NTAFGHKTLL RGGSTDANVP MSYGIPAIII GGGGKSTGFH ALSEAIDVTD
AWKGAQNSLV TVLGLVGVQG VSPALLPKRA PRPR
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