| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5275 |
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| Symbol | |
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| ID | 7972708 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5598284 |
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| End bp | 5600866 |
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| Gene Length | 2583 bp |
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| Protein Length | 860 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644795869 |
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| Product | Organic solvent tolerance protein |
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| Protein accession | YP_002947143 |
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| Protein GI | 239818233 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1452] Organic solvent tolerance protein OstA |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGGCGGC GCGTTGCCTT GCGGCGTTCC GGCCCGCCCC TGCCATTGGC CCTGTTGTCG
CTGGCGCTGC TGCATGCGCA CGGCGCCTCG GCCCAGCCGG CCGGGGGCCT CGATGGCCCG
CTCACGCTCA AGCGCACGCC GCAGCTGACC GAAACGCTGC CGCCCGCCGA GCGCAGCCAG
TTGCCCAGCC TGATCACCGG CGACCGCCTG TCGGGCCGCC AGGATCTCGA AACCGTGGTC
GAAGGCCATG CCACGCTGCG CCGCGGCGAA GTCGCCATCA CCGCCGACCG GCTCGAGTAC
TACCAGCCCG ACGACCGCGC CAGGGCGCGC GGCAACGTGC GCGTCAACCA GGCCGGCAAT
GTGTACGAAG GCCCCGAGCT CGAGCTCAAG CTCGAGACCT TCGAGGGCTT CTTCAACAAC
GTGCGCTATT CCTTCCTTGC CACCGGCGGA CATGGCGAGG CGCAGCGCAT CGATTTCGTC
GACAGCAACG TGTCGGTGGC CCGCACCGCC ACCTACACCA CCTGCCGCCG CGAGGACTTT
CCGGGCTGGA TGCCGGCCTG GCTGCTGTCT GCAGCCACGC TGACCACCGA CACCGAGGAA
AACGTCGGCG TGGCCACCGA CGCGCGGCTG AGCTTCATGG GCATCAGCAC GCCGCCGCTG
CCGAGCGTGA GCTTTCCGCT GTCGAACGAG CGCAAGAGCG GCCTGCTGCC GCCCACGATC
GGCATCGACA ACACCAACGG CATCGAGATC TCGCAGCCGT ACTACTGGAA CATCGCGCCC
AACCGCGACG CCACCTTCAC GCCCACGCTG ATGAGCAAGC GCGGCCTCAA CCTGGGCTCG
GAATTCCGCT ACCTCGAGAA GGAATACAGC GGCAGCATCC GCCTGGACCT GATGGGCAGC
GACCGCCTCG TGGGCCAGCG CTACAACGAA ACGCGCGCGG CGCAGCTGCA GCAGCTCGCC
AACGGGGAAA TCCAGGCCTC GGCCCTGAAT TTCGGCGCGC CGCCCAGCAG CAAGCGCTGG
GGCATCTGGG CCAACCACCA CCAGGATTTC AACGCGAAGG CGCTGGGGCT CGATTCGCTC
TCGGCCAACA TCAACATCAA CCGCGTCAGC GACAACGACT ACTGGCGCGA CTTCACGCGC
ACGCCCACCC TGGCGCAGCG CCAGCTGACG AACGACGCCT CGCTCAACTG GAGCAAGGGC
GACTGGAGCG GCGGCATCCG GGCGCTGCGC TACCAGACGC TGCAATACAG CCTGTCGCCG
ATCGTGCCGT CCTATGACCG GATGCCGCAG ATCACGGCCA ACTACAACAA GTACGACTGG
CACGGCTTCG ACGTTTCGCT GAACCTGGAC TACACGCGCT TTCGCGTCAA CACCATCCTG
GCCGGCCAGC CGGGCTTCGA CATCAACCAG CAGTCGCAGC CCGACGGCGA CCGCGCCCTG
GCCATTGCCA CCATCAGCCG GCCGTTCATC ACGCCGAGCT CCTTCGTCAT CCCCAAGCTG
CAGCTGAACA CGGCTTCATA CAACTACTAC CTGCCGCAGT CCGACGTTCC GAGGCTCACC
GTCAACGGAA CCCAGTACGT CAACGGCGTG CCCTACAACC CGAACTCGCT GTATTTCTTC
CCGACCTCGA GCAACCGGAC GGTGCCGACC TTCAGCCTCG ACAGCGGCCT GATCTTCGAG
CGCGACGCGA ACTACTTCGG CCGCGCCTTC CGCCAGACGC TGGAGCCGCG CGCCTACTAC
GTCTACACGC CGTTCCGCAA CCAGAGCATG CTGCCGAACT ACGATTCGGC GGCCAACGAT
TTCAGCTTTG CGACCATCTA CACCGAGAAC GCCTTCTCGG GCAACGACCG CATCTCCGAC
ACCAACACGC TCACGCTCGG CGTCACCTCG CGCCTGATCG ACCCCGACAC CGGCGTCGAG
GCGGCGCGCT TCGGCATTGC GCAGCGGCTG CGCTTCAGCG ACCAGAAGGT CACGCTGCCG
GGCGGCACGC CGGTGACCGA CCGCGCGAGC GACCTGCTGC TGGGCGCCCA GATCAACTGG
ACGCCCAAGT GGAGCCTGGA CACGGTCGTC CAGTACAACC CCGACACGCA CAAGTCGGAC
CGCTCGGCCA TCACCGCGCG CTACAACCCA GGGCCCTACC GCAACCTGAG CGCGGCCTTC
CGCTACCAGG CGCCCACCAC GCCCCTTGCC ACCGACGGCA ACAAGTCCTT CGACGTGGGC
TGGCAGTGGC CGCTCAACGA CCTGTGGGGC GACAAGGGCA AGGACCTCGG GCCGGGCAAG
GGCCAGGGCG GCGGGCGGTG GTACGCGGTC GGCCGGCTCA ACTACAGCCT GCAGGACAAG
AAACTCACGG ACGGCGTGCT GGGCTTCGAG TACGACGGCT GCTGCTGGAT CGGGCGCGTG
GTGCTGCAGC GCATCACGAC CGGCACGGTG ACCGCCAACA CCCGCATCAT GTTCCAGCTC
GAATTCGTCG GGTTCTCCAG CATCGGGTCG AGCCCGATGC AGACCTTGCG GACCAACATC
CAGCGCTACC AGCCCCTTCG CCAGCCCACC GAAGGGCCGA GCCGCTTCAC CAATTACGAC
TGA
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| Protein sequence | MRRRVALRRS GPPLPLALLS LALLHAHGAS AQPAGGLDGP LTLKRTPQLT ETLPPAERSQ
LPSLITGDRL SGRQDLETVV EGHATLRRGE VAITADRLEY YQPDDRARAR GNVRVNQAGN
VYEGPELELK LETFEGFFNN VRYSFLATGG HGEAQRIDFV DSNVSVARTA TYTTCRREDF
PGWMPAWLLS AATLTTDTEE NVGVATDARL SFMGISTPPL PSVSFPLSNE RKSGLLPPTI
GIDNTNGIEI SQPYYWNIAP NRDATFTPTL MSKRGLNLGS EFRYLEKEYS GSIRLDLMGS
DRLVGQRYNE TRAAQLQQLA NGEIQASALN FGAPPSSKRW GIWANHHQDF NAKALGLDSL
SANININRVS DNDYWRDFTR TPTLAQRQLT NDASLNWSKG DWSGGIRALR YQTLQYSLSP
IVPSYDRMPQ ITANYNKYDW HGFDVSLNLD YTRFRVNTIL AGQPGFDINQ QSQPDGDRAL
AIATISRPFI TPSSFVIPKL QLNTASYNYY LPQSDVPRLT VNGTQYVNGV PYNPNSLYFF
PTSSNRTVPT FSLDSGLIFE RDANYFGRAF RQTLEPRAYY VYTPFRNQSM LPNYDSAAND
FSFATIYTEN AFSGNDRISD TNTLTLGVTS RLIDPDTGVE AARFGIAQRL RFSDQKVTLP
GGTPVTDRAS DLLLGAQINW TPKWSLDTVV QYNPDTHKSD RSAITARYNP GPYRNLSAAF
RYQAPTTPLA TDGNKSFDVG WQWPLNDLWG DKGKDLGPGK GQGGGRWYAV GRLNYSLQDK
KLTDGVLGFE YDGCCWIGRV VLQRITTGTV TANTRIMFQL EFVGFSSIGS SPMQTLRTNI
QRYQPLRQPT EGPSRFTNYD
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