| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5268 |
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| Symbol | |
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| ID | 7972701 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5589616 |
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| End bp | 5591097 |
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| Gene Length | 1482 bp |
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| Protein Length | 493 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644795862 |
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| Product | putative transmembrane protein |
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| Protein accession | YP_002947136 |
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| Protein GI | 239818226 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.54014 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGAGC AAGCAGGCGC CCAGCGCGCC TACCGTGCGC CCTGCCCTGG CTGCGGCGCA
CCGGTCGAAT TCAGGTCCGC GCAATCGGCC TTCGCCGTTT GCCCCTACTG CCAGAGCACC
GTCGTGCGCC AGGGCGAGAC GCTCGCGCGC GTCGGCAAGA TGGCGGAGCT GTTCGACGAC
TTCAGCCCGC TGCAGCTGTT TGCCGCGGGC CGCATCCAGA ACCAGCCGTT CACCATCGTC
GGCCGGCTGC AATACAGCAA CCCCGGCGGG CGCTGGACCG AGTGGATCGC CGCGCTGGAC
GGCGACCGCA CCGGCATCCT GAGCGAGGAC AACGGCGCCT ACGTGTTCGC GCTGCCCTTC
GAGCTGCAGC GCGCCGCGCC GCCGCCGGGC GACCTGCGCG TGGGCGCCAC CAGCGCATTC
AACGGCCAGA GCTACACCGT CTCGTCGAAC GAGCAGGTCA CGCTGCTGTC CGCCCAGGGC
GAACTGCCGC ACCTGCCCGA GCTGGGCCGC CCCTTCCCGA TGGTCGAGCT GCGCAGCGAC
AAGGGGCTGG TGCTCAGCAT CGACTACGGC ACCGAGCCGC CGGGCGCCTA CCTGGGCCGC
TCGGTGCAGC TGGAGGACCT GCAGCTCACC GGCCTGCGCG ACGAATCCGC CAAGGATGAA
AAAGGCCGCG CCTTCAATTG CCCCAATTGC GGCGCGCCCG TCACCGTCAA CCTGGCCGAC
AGCAAGAGCA TCACCTGCGG CTCGTGCAAC AGCATCATCG ACCTGTCGCA GGGCATCGGC
GGCGAGCTGA AGCACGCGGC GCAGGACGAG CCCGTGCGCC CGCTCATCCC CATCGGCAGC
ACCGGCCAGC TGCAGGGCGC GCAATGGCAG GTGGTGGGCT TCCAGCACCG CATGGGCGTG
GAGCCCGGCG ACGACGAGCA CTTTGGCTGG AACGAATACC TGCTGTACAA CAAGAAGCGC
GGCTTCAGCT TCCTGGTCGA TGCCGAGGAC GGCTGGAGCA TGGTCAAGCC GACCACCGGC
GCGCCGGTGA TGGCCGAGAA CGGCAGCAGC GCCAGCTACC TGGGCAAGCG CTACACGCAG
CAATACGCCT ACAACGCCGA GACCACCTAC GTGGCGGGCG AGTTCTACTG GCAGGTGGAG
CGCGGCCAGA AAACCTTCAA CCGCGATTTC GCGAGCGGCA ACGCGCTGCT GTCGATGGAG
CGCTCGGCCA AGGAGCTGAC CTGGTCCTCG GGCAGCAAGC TCGACAGCGG CCTGGTGTCC
GCCGCATTCA AGCTCGACGA CAAGAAGGAC ATGTTCGCGC GCGGCGATGC GCTGCCGGTC
AGCGCCGCAT CGGGCCTGGG CTGCGGCACC ATCATCCTCA TCGTGATCGT CATCATCGTG
CTGCTGGTCA TCCTGAGCAC CTGCAGCGGT GGCTCGTCCG GCGGGTCGCG CAGCTACGGC
GGCTCCTACG GCGGCTATTC GAGCGGCGGC GGCCACAAAT GA
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| Protein sequence | MAEQAGAQRA YRAPCPGCGA PVEFRSAQSA FAVCPYCQST VVRQGETLAR VGKMAELFDD
FSPLQLFAAG RIQNQPFTIV GRLQYSNPGG RWTEWIAALD GDRTGILSED NGAYVFALPF
ELQRAAPPPG DLRVGATSAF NGQSYTVSSN EQVTLLSAQG ELPHLPELGR PFPMVELRSD
KGLVLSIDYG TEPPGAYLGR SVQLEDLQLT GLRDESAKDE KGRAFNCPNC GAPVTVNLAD
SKSITCGSCN SIIDLSQGIG GELKHAAQDE PVRPLIPIGS TGQLQGAQWQ VVGFQHRMGV
EPGDDEHFGW NEYLLYNKKR GFSFLVDAED GWSMVKPTTG APVMAENGSS ASYLGKRYTQ
QYAYNAETTY VAGEFYWQVE RGQKTFNRDF ASGNALLSME RSAKELTWSS GSKLDSGLVS
AAFKLDDKKD MFARGDALPV SAASGLGCGT IILIVIVIIV LLVILSTCSG GSSGGSRSYG
GSYGGYSSGG GHK
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