| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5263 |
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| Symbol | |
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| ID | 7972696 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5583400 |
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| End bp | 5584374 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644795857 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_002947131 |
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| Protein GI | 239818221 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCCCCG AACTGCTCCC CGCGATCGCC GCCTTCGCAC GCATTGCGCA CCACGCCAGC
TTCACGCGGG CGGCGCAAGA GCTAGGCGTA TCGCCCTCGG CCCTGTCGCA GACCGTGCGC
ACGCTCGAGG GGCGGCTGGG CGTGCGCCTG CTCGACCGCA CCACGCGGCG CGTCGGCGTG
ACCGAGCTGG GCCAGCAGTT GCTCAAGGGC GCGCAGCCGG CGCTGGCCGC GCTCGCGCAG
GCGGTCGAAG GGCTCGACGA GGCGCGCGAC AAGCCGGCCG GGCTGCTGCG CCTGAACGTC
GCGCGCGTGT CGGCCGAATT GCTGCTGAAC CCGCACTTCG CGGACTTTGC CGAGGCCTAT
CCCGACATCA CGCTGGAGCT GGTCTGCGAC AACCGCATGA TCGAACTGGT CGAAGGCGGC
TTCGATGCCG GCATCCGGCT TGGCGAAAGC CTGGCGCAGG ACGTGGTGGC CCTGCCGGTG
GGTGGGCCGC AGCGCATGGT GACCCTGGCG TCGCCGCGCT ACCTGGCGGG GCGCAGGCCA
CCGAAGACGC CCGAGGACCT GCGCGAGCAC CAGTGCCTGA ACTACCGCCT GACCACGGGC
AGCCTCTATC GCTGGGAATA CGCGCAGGAC GGCCGCGTGC TCGATGTCGA AGTGGCCGGG
CCGCTGATCA GCAACGACGG CGATGTGCTG CTGGCCGCCG CGCGCGACGG CGCGGGCATC
ATGGTGGCCT TCGAAGGCAT GGTGCGCGGC GACCTGGAAA GCGGCCGCCT GGTGCCGTTG
CTCGAGCCCT GGTGGCCCAC CTTTCCGGGC TTCTATCTCT ACCACCCGAG CCGCGCGCAG
ATGCCGCGCA AGCTCAGGGT GTTCATCGAC TTCCTGCAGG CGCGGCATGC GCCGCCGCCG
GTGTCGCAGC GCGCCGTCAA GCTCGCATCA GTGCCTCGAT CTCGTCCGCC TTCACCGGCA
CGCCGCGCGA AATGA
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| Protein sequence | MSPELLPAIA AFARIAHHAS FTRAAQELGV SPSALSQTVR TLEGRLGVRL LDRTTRRVGV
TELGQQLLKG AQPALAALAQ AVEGLDEARD KPAGLLRLNV ARVSAELLLN PHFADFAEAY
PDITLELVCD NRMIELVEGG FDAGIRLGES LAQDVVALPV GGPQRMVTLA SPRYLAGRRP
PKTPEDLREH QCLNYRLTTG SLYRWEYAQD GRVLDVEVAG PLISNDGDVL LAAARDGAGI
MVAFEGMVRG DLESGRLVPL LEPWWPTFPG FYLYHPSRAQ MPRKLRVFID FLQARHAPPP
VSQRAVKLAS VPRSRPPSPA RRAK
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