| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5245 |
|---|
| Symbol | |
|---|
| ID | 7969904 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 5566370 |
|---|
| End bp | 5567155 |
|---|
| Gene Length | 786 bp |
|---|
| Protein Length | 261 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644795839 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_002947113 |
|---|
| Protein GI | 239818203 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1126] ABC-type polar amino acid transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0596713 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGCCG CCCCGCCGCC CGTTCTCCGC ATCCAGGCCC TGCACAAGCG CTACGGCAGC
CACCACGTGC TGCGCGGTAT CGACCTCGAC GTGCTGCCCG GCGACCGCAT CGCCATCATC
GGTTCGAGCG GCTCGGGCAA GAGCACGCTG CTGCGCTGCC TCAACTTCAT GGAAGTGCCC
TCCGCCGGGC AGGTGGTCCT CAAGGGACGC GCCGTGGGCC GGCCCGTGCC GGGCTCCGAC
GCCCTGCGCT ATGGCGAGGC CGAGCTCAGC GAGGTGCGCA AGCAGGTCGG CATGGTGTTC
CAGCAGTTCA ACCTGTTCCC GCACATGACG GTGCTGCAGA ACGTCATGGA GGGGCTGGTG
ACGGTCAAGC GCCTGCCCGC GGCAGAGGCC CGCGAGCGCG CGCTGGCCGA AATCGCCAAG
GTGGGGCTCG CGGAAAAAGC CGCCGCCTAC CCGGGCCACC TGTCCGGCGG CCAGCAGCAG
CGCGTCGCCA TCGCCCGCGC GCTGGCCATG GAGCCCGAGG TGCTGCTGTT CGACGAGCCC
ACGTCCTCGC TCGATCCCGA ACTGGTCGGC GAGGTGCTCG GCACCATCCG CGCGCTGGCC
GACGAAGGCC GGACCATGCT GCTCGTGACG CACGAGCTCG GCTTTGCCTA TCACTTTGCC
AACAAGGTGG TGTTCCTCGC CGACGGGCTG CTGCACGAAA GCGGCACGCC CGACGAGGTG
CTCAAGCACC CGAAGCAGGA GCGCACGCAG CGCTTCATCG AGCGCTTCAC CGCCTTCCAC
TTCTGA
|
|---|
| Protein sequence | MTAAPPPVLR IQALHKRYGS HHVLRGIDLD VLPGDRIAII GSSGSGKSTL LRCLNFMEVP
SAGQVVLKGR AVGRPVPGSD ALRYGEAELS EVRKQVGMVF QQFNLFPHMT VLQNVMEGLV
TVKRLPAAEA RERALAEIAK VGLAEKAAAY PGHLSGGQQQ RVAIARALAM EPEVLLFDEP
TSSLDPELVG EVLGTIRALA DEGRTMLLVT HELGFAYHFA NKVVFLADGL LHESGTPDEV
LKHPKQERTQ RFIERFTAFH F
|
|---|
| |