| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5244 |
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| Symbol | |
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| ID | 7969903 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5565397 |
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| End bp | 5566350 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644795838 |
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| Product | aminotransferase class IV |
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| Protein accession | YP_002947112 |
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| Protein GI | 239818202 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase |
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| TIGRFAM ID | [TIGR01121] D-amino acid aminotransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.22582 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACGCCG ACAGCGCCCC CTCGAAGACC AGTTCCCAGG CCTACGCCCC CGATGCACGC
AACGACGCAG TGCTCGTCTA CGTGAACGGG CAGTTCGTGC CGCGGCACCA GGCGGTGGTG
TCGGTGTTCG ACGCCGGCTA CGTGTGCGGC GACGGCGTGT GGGAGGGCGT GCGCCTGGTC
GACGGCCGCA TCGTCTCGTT CGACGCCCAC ATCGACCGCA TGTACGAGGG CGCGAAGTCG
ATCGCGCTGG ACATCGGCAT GACCCGGGCG CAGATGAAGC AGGTGGTGGT CGACACCTTC
CTGCGCAACG GCATGCGCGA CGGCGCGCAT GCACGGCTCA TGGTCACGCG CGGCGTCAAG
AAAACGCCCA ACCAGGACCC GCGCTTCATC ATCGGCGGCG CCACCGTGGT GTGCGTGGCC
GAGCACAAGG TGGTCACGCC GGAGGCCAAG CGCAACGGCC TGAAGCTCTT CACCTCGACC
CTGCGCTGCA GCGGGCCGGA CGTGTTCGAC CTGCGGCTCA ATTCGCACAG CCGCCTCAAC
CTGATCCAGG CCCTGATCCA GGCCATCCAG GCCGGCGCGG ACGAGGCGCT GATGCTCGAC
CCCCACGGCT TCGTCTCGAG CTGCAATTCC ACCAACTTCT TCGCGGTGCG CCACGGCGCG
CTGTGGACCT CGTCGGGGCG CTACTGCTTC AACGGCATCA CGCGCGCCAC CGTGGTGCGG
CTTGCACGCG AGGCGGGCAT CCCGGTGCAC GAGGGCGACT TCACGCTGGC CGAGGTCTAC
GCGGCGGACG AGGCCTTCGT CACCGGCACG CTGGCCGGGC TCACGCCGGT GTCGTCGGTC
GACGGCCGCG CGCTGGCGCC GCTCGGCCCG ATCACGCAGC GGCTCGATGC GCTCTACCGC
GCCTACATCG CCAGCGCGAA CGAGGCCCAC GGCGCGCTGC CCGCAGCCGC CTGA
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| Protein sequence | MHADSAPSKT SSQAYAPDAR NDAVLVYVNG QFVPRHQAVV SVFDAGYVCG DGVWEGVRLV
DGRIVSFDAH IDRMYEGAKS IALDIGMTRA QMKQVVVDTF LRNGMRDGAH ARLMVTRGVK
KTPNQDPRFI IGGATVVCVA EHKVVTPEAK RNGLKLFTST LRCSGPDVFD LRLNSHSRLN
LIQALIQAIQ AGADEALMLD PHGFVSSCNS TNFFAVRHGA LWTSSGRYCF NGITRATVVR
LAREAGIPVH EGDFTLAEVY AADEAFVTGT LAGLTPVSSV DGRALAPLGP ITQRLDALYR
AYIASANEAH GALPAAA
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