| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5229 |
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| Symbol | |
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| ID | 7969888 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5550453 |
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| End bp | 5551379 |
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| Gene Length | 927 bp |
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| Protein Length | 308 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644795823 |
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| Product | protein of unknown function DUF6 transmembrane |
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| Protein accession | YP_002947097 |
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| Protein GI | 239818187 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2962] Predicted permeases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACCG CCGCCACGGC TCTCGCACTG CACCCCGCGG GCTCCAGGCG CGCCGGCGTG
GCGCTGTTCT TCTGCGCGCT GGTGGCCTTT GCTTCCTACG ACGCGTTCTG CAAGTACATG
CTGCAGTTCT ACCCGGCGCC CTTCGTCAAC GTGATGCGCT ACGTCGCGGT GAGCGGCATT
GCCTTTGCGA TGCTGCTGCG CCATGGCGAC CTGCGCATGT GGCGCACGCC GCACAAGCCC
TTGCTGCTGC TGCGCGGGCT GATGCTCGCG ACGGTGGCCA CCTGCTTCAT GACGGCGCTC
ATCTGGATGC CGCTGGCCGA GGCCACGGCC ATCTACTTCA CCGCGCCGCT GCTGATGGTG
GCGCTGTCGC CGTGGCTGCT CGGCGAGCAG GTGCGGCGCA GCCGCTGGGT GGCCGTGACG
GTCGGCTTCG GCGGCATGTT GCTGATCGTG CGGCCGGGCG CCGACCTGCC GCTGCTCGGC
ACGGTGCTGA TGGCGGTGGC CGCCGTCTGC TACGCGATCT TCCAGCTGCT CACGCGGCGG
CTCGCGGGCC TGGTCGCGGG GCCGGTGCAG TACGCCTGGA CCGCGCTGGC CTGCTTCGTC
GTCACGCTGC TGCCCGCGCC CTTCTTCCTG CCCGCCCAGC AGCCGCCCTG GGGCGACGTG
GCGCTGCTGC TCGCGGGCGG CGCCTGCAGC GCGGCGGCAC AGTGGCTGCT GCTGGCCGCC
TTCGAGCGCG TCGAGGCCTC GACGCTGGCG CCGCTCAACT ACTTCCAGCT GCTGCTGGCC
GTGGCCTTCA GCACCTTCTG GTTCCGCCGG CCGCCCGACG CGATCGCGAT GGCCGGCATC
GCGCTGATCA TGGCGGCGGG CATCTATCTG GCGCGCGCGG GGCGGGGCCT GAAGACCGTG
CCGGCCGCGC CAGATGCCAT CCGGTGA
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| Protein sequence | MSTAATALAL HPAGSRRAGV ALFFCALVAF ASYDAFCKYM LQFYPAPFVN VMRYVAVSGI
AFAMLLRHGD LRMWRTPHKP LLLLRGLMLA TVATCFMTAL IWMPLAEATA IYFTAPLLMV
ALSPWLLGEQ VRRSRWVAVT VGFGGMLLIV RPGADLPLLG TVLMAVAAVC YAIFQLLTRR
LAGLVAGPVQ YAWTALACFV VTLLPAPFFL PAQQPPWGDV ALLLAGGACS AAAQWLLLAA
FERVEASTLA PLNYFQLLLA VAFSTFWFRR PPDAIAMAGI ALIMAAGIYL ARAGRGLKTV
PAAPDAIR
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